Hs03349819_cn

• Gene Symbol: FAAP20
• Assay Reference Genome Location: Chr.1:2209487 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 199990
• Gene Name: Fanconi anemia core complex associated protein 20
• Gene Aliases: C1orf86, FP7162
• Location: Chr.1:2184460-2212720 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAAP20	NM_001282670.1			NP_001269599.1
	AK126870.1			BAC86730.1

Target Gene Details

• Entrez Gene ID: 105378592
• Gene Name: uncharacterized LOC105378592
• Gene Aliases: -
• Location: Chr.1:2207597-2215193 on Build GRCh38
• Assay Gene Location: Overlaps Intron 3 - Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105378592	XM_017003076.1			XP_016858565.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	FAAP20 CALML6 VWA1 KLHL17 LOC100129534 ACAP3 LOC107984841 FAM87B CDK11B HES4 LOC100134822 LOC105378947 FNDC10 FAM138A SLC35E2 CCNL2 MIR6859-2 PRKCZ MIR6723 LOC105378949 C1orf159 ISG15 LINC01342 TMEM240 LOC105378589 NADK MRPL20 CFAP74 LOC100288175 ATAD3A LOC105378591 LOC100506504 TTLL10-AS1 MIR6808 B3GALT6 RNF223 MIR200B MMP23A OR4F16 CPTP LOC105378592 TNFRSF18 LOC100133331 FAM41C LOC102725121 SLC35E2B MIR1302-2 LOC729737 AURKAIP1 ATAD3C MTND1P23 LOC107985729 MMP23B SKI CDK11A LOC100132287 OR4F5 LINC00115 LOC105378948 TTLL10 LOC284600 MORN1 ANKRD65 MIR6726 UBE2J2 TMEM52 LOC107985728 SSU72 ATAD3B MIR6727 PLEKHN1 FAM132A WASH7P DDX11L1 DVL1 AGRN LOC102724312 MIB2 CPSF3L SAMD11 MIR429 LOC100288069 GNB1 NOC2L LINC01128 MIR6859-1 SCNN1D PERM1 PUSL1 SDF4 LOC100287934 GABRD LOC100130417 MXRA8 TNFRSF4 LOC101928626 MTND2P28 OR4F29 LOC148413 TMEM88B MIR200A TAS1R3
dgv49n54	Chr.1:2151050 - 2289783 on Build GRCh38	Loss	PRKCZ FAAP20 LOC100506504 SKI LOC105378592
nsv951530	Chr.1:2153662 - 2229961 on Build GRCh38	Deletion	PRKCZ FAAP20 LOC100506504 SKI LOC105378592
nsv470682	Chr.1:2188394 - 2378754 on Build GRCh38	Loss	MORN1 FAAP20 SKI LOC100129534 LOC105378592
nsv834557	Chr.1:2117631 - 2311104 on Build GRCh38	Loss	PRKCZ FAAP20 LOC100506504 SKI LOC105378592
nsv818111	Chr.1:2208822 - 2224923 on Build GRCh38	Loss	FAAP20 LOC105378592

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cellular response to DNA damage stimulus
translesion synthesis
interstrand cross-link repair

Function(s)

protein binding
polyubiquitin binding
ubiquitin binding
metal ion binding
K63-linked polyubiquitin binding