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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1230376 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03350542_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
DC405714.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication SCNN1D RNF223 MIR200B MIR6727 PUSL1 TTLL10 LOC100288175 TNFRSF18 MIR6726 MIR429 C1orf159 CPTP FAM132A TTLL10-AS1 LINC01342 B3GALT6 AGRN TAS1R3 CPSF3L MIR200A LOC105378948 UBE2J2 ACAP3 SDF4 TNFRSF4
nsv821698 Chr.1:1228970 - 1234390 on Build GRCh38 Gain B3GALT6 SDF4
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss NOC2L MIR6727 LOC284600 SAMD11 MIR6808 TTLL10 LOC102724312 LOC107985729 MIR429 C1orf159 CPTP FAM87B FAM132A TTLL10-AS1 ANKRD65 SLC35E2B LOC100130417 LOC100287934 AGRN TMEM88B HES4 TAS1R3 AURKAIP1 MMP23B UBE2J2 FNDC10 LOC100288069 SSU72 LOC107985728 LOC148413 TNFRSF4 FAM41C CCNL2 SCNN1D CDK11A VWA1 RNF223 MIR200B PERM1 PUSL1 MRPL20 LINC01128 ATAD3C LINC00115 ATAD3B DVL1 LOC100288175 TNFRSF18 MXRA8 MIR6726 NADK ATAD3A MIB2 ISG15 LINC01342 B3GALT6 TMEM240 KLHL17 CPSF3L MIR200A LOC105378948 SLC35E2 MMP23A ACAP3 CDK11B SDF4 PLEKHN1
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100506504 MIR6808 LOC102724312 FAAP20 GABRD OR4F16 LOC107985729 MIR429 CPTP MTND2P28 TTLL10-AS1 ANKRD65 AGRN TAS1R3 AURKAIP1 MMP23B FNDC10 SSU72 LOC100132287 LOC107985728 RNF223 MIR200B PERM1 PUSL1 ATAD3C FAM138A LOC105378949 OR4F5 LINC00115 MXRA8 MIR6723 OR4F29 NADK MORN1 MIR6859-2 SKI ISG15 B3GALT6 WASH7P TMEM240 CPSF3L LOC105378948 MMP23A ACAP3 LOC100129534 PLEKHN1 DDX11L1 NOC2L LOC100134822 LOC100133331 CALML6 MIR6727 GNB1 LOC284600 SAMD11 LOC107984841 MIR1302-2 TTLL10 LOC105378947 PRKCZ TMEM52 C1orf159 FAM87B FAM132A LOC105378589 SLC35E2B LOC100130417 LOC100287934 TMEM88B HES4 LOC105378591 UBE2J2 LOC100288069 LOC148413 LOC105378592 TNFRSF4 FAM41C CCNL2 SCNN1D CDK11A LOC729737 CFAP74 VWA1 MRPL20 LINC01128 ATAD3B DVL1 LOC100288175 TNFRSF18 MIR6726 ATAD3A MIR6859-1 MIB2 MTND1P23 LINC01342 KLHL17 LOC102725121 MIR200A LOC101928626 SLC35E2 CDK11B SDF4
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss SCNN1D FAM132A UBE2J2 ACAP3 B3GALT6 MIR6726 SDF4
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss NOC2L RNF223 MIR200B LOC284600 SAMD11 PERM1 TTLL10 LINC01128 LINC00115 LOC100288175 TNFRSF18 MIR429 C1orf159 FAM87B FAM132A TTLL10-AS1 ISG15 LOC100130417 LINC01342 B3GALT6 AGRN HES4 KLHL17 MIR200A LOC105378948 UBE2J2 LOC107985728 SDF4 TNFRSF4 FAM41C PLEKHN1
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion SCNN1D VWA1 MIR200B MIR6727 PUSL1 MRPL20 MIR6808 TTLL10 LOC102724312 ATAD3C ATAD3B DVL1 LOC107985729 TNFRSF18 MXRA8 MIR6726 MIR429 C1orf159 ATAD3A CPTP FAM132A TTLL10-AS1 ANKRD65 MIB2 LINC01342 B3GALT6 TMEM88B TMEM240 TAS1R3 CPSF3L MIR200A AURKAIP1 MMP23B UBE2J2 FNDC10 ACAP3 CDK11B SSU72 SDF4 LOC148413 TNFRSF4 CCNL2
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain NOC2L SCNN1D RNF223 MIR200B MIR6727 LOC284600 SAMD11 PERM1 PUSL1 MRPL20 MIR6808 TTLL10 DVL1 LOC100288175 TNFRSF18 MXRA8 MIR6726 MIR429 C1orf159 CPTP FAM132A TTLL10-AS1 ANKRD65 ISG15 LOC100130417 LINC01342 B3GALT6 AGRN TMEM88B HES4 KLHL17 TAS1R3 CPSF3L MIR200A LOC105378948 AURKAIP1 UBE2J2 ACAP3 LOC107985728 SDF4 LOC148413 TNFRSF4 PLEKHN1 CCNL2
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain SCNN1D FAM132A TTLL10-AS1 RNF223 MIR200B LINC01342 B3GALT6 TTLL10 MIR200A LOC105378948 UBE2J2 TNFRSF18 MIR429 SDF4 C1orf159 TNFRSF4
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss SCNN1D FAM132A TTLL10-AS1 RNF223 MIR200B LINC01342 B3GALT6 TTLL10 MIR200A UBE2J2 TNFRSF18 ACAP3 MIR6726 MIR429 SDF4 C1orf159 TNFRSF4
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain SCNN1D FAM132A TTLL10-AS1 MIR200B MIR6727 B3GALT6 PUSL1 TTLL10 CPSF3L MIR200A UBE2J2 TNFRSF18 ACAP3 MIR6726 MIR429 SDF4 TNFRSF4
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10-AS1 TNFRSF18 B3GALT6 SDF4 TTLL10 TNFRSF4

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More Information


Additional Information:

For this assay, SNP(s) [rs368245192] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

calmodulin-related

Gene Ontology Categories:

Function(s) Process(es)


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