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See other SAMD11 CNV Assays ›
Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:941408 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03351489_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
AK054643.1 BAB70781.1
BC024295.2 AAH24295.1
BC033213.1 AAH33213.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv15n54 Chr.1:934063 - 943937 on Build GRCh38 Loss SAMD11
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain LOC100288175 AGRN LOC284600 PLEKHN1 C1orf159 ISG15 HES4 SAMD11 LOC107985728 PERM1 KLHL17 NOC2L LOC100130417 LOC105378948 RNF223
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss CCNL2 SSU72 TMEM88B LOC100288069 MTND2P28 CDK11B MRPL20 LOC148413 ATAD3C ATAD3B LOC107985728 TTLL10 MIR1302-2 LOC100130417 CPSF3L TAS1R3 TNFRSF4 LOC107985729 ISG15 LOC100129534 MIB2 LOC100132287 LOC105378947 LOC100287934 PLEKHN1 AURKAIP1 LOC105378948 ACAP3 FAM138A LOC100506504 LINC00115 ATAD3A LINC01128 SDF4 SLC35E2 MIR200B OR4F16 MIR429 MXRA8 DVL1 UBE2J2 MIR6859-1 VWA1 MIR6723 MIR6808 C1orf159 LOC105378589 PERM1 WASH7P FNDC10 TNFRSF18 OR4F5 FAAP20 LOC729737 GNB1 OR4F29 LOC100133331 MMP23B TTLL10-AS1 LOC100288175 MIR6859-2 PRKCZ CALML6 LOC284600 CDK11A SAMD11 MIR6727 MORN1 LINC01342 SCNN1D LOC101928626 FAM41C ANKRD65 MTND1P23 AGRN LOC102725121 TMEM240 CFAP74 LOC100134822 SLC35E2B DDX11L1 LOC105378591 MIR200A LOC105378949 PUSL1 LOC102724312 MMP23A LOC107984841 MIR6726 B3GALT6 FAM87B HES4 CPTP GABRD KLHL17 NADK NOC2L FAM132A TMEM52 LOC105378592 SKI RNF223
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion LOC100288175 AGRN LOC284600 PLEKHN1 C1orf159 ISG15 HES4 SAMD11 LOC107985728 PERM1 KLHL17 NOC2L LOC100130417 LOC105378948 RNF223
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion SAMD11 LOC107985728 PERM1 KLHL17 NOC2L LOC284600 PLEKHN1 LOC100130417
dgv8n54 Chr.1:925754 - 943937 on Build GRCh38 Loss SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain FAM41C AGRN PLEKHN1 C1orf159 LOC107985728 TTLL10 PERM1 TNFRSF18 MIR200A LOC100130417 LOC105378948 TTLL10-AS1 LOC100288175 TNFRSF4 LOC284600 SDF4 MIR200B ISG15 HES4 SAMD11 KLHL17 NOC2L LINC01342 MIR429 RNF223
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain LOC101928626 FAM41C LOC105378947 LOC100287934 LOC100288069 MTND2P28 MTND1P23 AGRN PLEKHN1 MIR6723 C1orf159 LOC107985728 PERM1 LOC100130417 LOC105378948 LOC100133331 LOC100288175 LINC00115 LOC107984841 LOC284600 LINC01128 FAM87B ISG15 HES4 SAMD11 OR4F16 KLHL17 NOC2L RNF223
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss CCNL2 SSU72 DVL1 UBE2J2 TMEM88B LOC100288069 CDK11B MRPL20 VWA1 LOC148413 MIR6808 C1orf159 ATAD3C ATAD3B LOC107985728 TTLL10 PERM1 FNDC10 TNFRSF18 LOC100130417 CPSF3L MMP23B TTLL10-AS1 TAS1R3 LOC100288175 TNFRSF4 LOC284600 LOC107985729 CDK11A ISG15 SAMD11 MIR6727 MIB2 LINC01342 SCNN1D FAM41C ANKRD65 LOC100287934 AGRN PLEKHN1 TMEM240 SLC35E2B AURKAIP1 MIR200A LOC105378948 ACAP3 PUSL1 LINC00115 ATAD3A LOC102724312 MMP23A MIR6726 LINC01128 SDF4 B3GALT6 SLC35E2 MIR200B FAM87B HES4 CPTP KLHL17 NADK NOC2L FAM132A MIR429 MXRA8 RNF223
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss FAM41C UBE2J2 AGRN PLEKHN1 C1orf159 LOC107985728 TTLL10 PERM1 TNFRSF18 MIR200A LOC100130417 LOC105378948 TTLL10-AS1 LOC100288175 LINC00115 TNFRSF4 LOC284600 LINC01128 SDF4 B3GALT6 MIR200B FAM87B ISG15 HES4 SAMD11 KLHL17 NOC2L FAM132A LINC01342 MIR429 RNF223
nsv1013524 Chr.1:939510 - 1161955 on Build GRCh38 Gain LOC100288175 AGRN PLEKHN1 C1orf159 ISG15 HES4 SAMD11 PERM1 KLHL17 NOC2L LOC105378948 LINC01342 RNF223
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain CCNL2 ANKRD65 DVL1 UBE2J2 TMEM88B AGRN MRPL20 PLEKHN1 LOC148413 MIR6808 C1orf159 LOC107985728 AURKAIP1 TTLL10 PERM1 TNFRSF18 MIR200A LOC100130417 LOC105378948 CPSF3L ACAP3 TTLL10-AS1 TAS1R3 PUSL1 LOC100288175 TNFRSF4 LOC284600 MIR6726 SDF4 B3GALT6 MIR200B ISG15 HES4 SAMD11 MIR6727 CPTP KLHL17 NOC2L FAM132A LINC01342 MIR429 SCNN1D MXRA8 RNF223
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss ISG15 HES4 SAMD11 LOC107985728 PERM1 KLHL17 AGRN NOC2L LOC284600 PLEKHN1 LOC100130417
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion TTLL10-AS1 LOC100288175 AGRN TNFRSF4 PLEKHN1 SDF4 C1orf159 MIR200B ISG15 HES4 SAMD11 TTLL10 PERM1 KLHL17 TNFRSF18 NOC2L MIR200A LOC105378948 LINC01342 MIR429 RNF223
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain FAM41C HES4 SAMD11 LOC107985728 PERM1 KLHL17 NOC2L LOC284600 PLEKHN1 LOC100130417 LINC01128
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain SAMD11 LOC107985728

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:


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