Hs03355658_cn

• Gene Symbol: FAAP20
• Assay Reference Genome Location: Chr.1:2212709 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 199990
• Gene Name: Fanconi anemia core complex associated protein 20
• Gene Aliases: C1orf86, FP7162
• Location: Chr.1:2184460-2212720 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAAP20	NM_001282670.1			NP_001269599.1
	AK126870.1			BAC86730.1

Target Gene Details

• Entrez Gene ID: 105378592
• Gene Name: uncharacterized LOC105378592
• Gene Aliases: -
• Location: Chr.1:2207597-2215193 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105378592	XM_017003075.1	1	2485	XP_016858564.1
	XM_017003076.1	1	2485	XP_016858565.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	UBE2J2 PUSL1 OR4F5 VWA1 SSU72 LOC100132287 FAM138A OR4F29 CFAP74 B3GALT6 SCNN1D C1orf159 WASH7P LOC105378592 LOC100506504 LOC105378589 KLHL17 MIR6723 PRKCZ MIR6859-2 LOC100133331 MXRA8 PERM1 LOC729737 LINC01128 FNDC10 TNFRSF18 SAMD11 MIR6726 TTLL10-AS1 MTND1P23 LOC100129534 RNF223 FAAP20 ACAP3 MIR200B TMEM88B NADK DDX11L1 GABRD ANKRD65 LINC00115 LOC105378947 SDF4 TTLL10 LOC102725121 MMP23A MORN1 CPSF3L ATAD3C LOC100288069 LOC105378591 LOC101928626 LOC107984841 PLEKHN1 ATAD3B CALML6 FAM41C LOC100130417 CCNL2 LOC105378949 SLC35E2B MIR1302-2 LOC100287934 LOC100134822 SLC35E2 OR4F16 TMEM240 TNFRSF4 HES4 LOC107985728 LINC01342 MIR6859-1 CDK11B LOC100288175 LOC102724312 FAM87B MTND2P28 AGRN LOC107985729 TMEM52 SKI FAM132A MIR429 MIR6808 MIR6727 GNB1 NOC2L CPTP AURKAIP1 LOC148413 MIB2 ATAD3A DVL1 TAS1R3 MIR200A ISG15 MMP23B LOC284600 MRPL20 LOC105378948 CDK11A
dgv49n54	Chr.1:2151050 - 2289783 on Build GRCh38	Loss	LOC100506504 SKI FAAP20 PRKCZ LOC105378592
nsv951530	Chr.1:2153662 - 2229961 on Build GRCh38	Deletion	LOC100506504 SKI FAAP20 PRKCZ LOC105378592
nsv470682	Chr.1:2188394 - 2378754 on Build GRCh38	Loss	SKI LOC100129534 FAAP20 MORN1 LOC105378592
nsv834557	Chr.1:2117631 - 2311104 on Build GRCh38	Loss	LOC100506504 SKI FAAP20 PRKCZ LOC105378592
nsv818111	Chr.1:2208822 - 2224923 on Build GRCh38	Loss	FAAP20 LOC105378592

More Information

• Set Membership: Intragenic, Exonic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cellular response to DNA damage stimulus
translesion synthesis
interstrand cross-link repair

Function(s)

protein binding
polyubiquitin binding
ubiquitin binding
metal ion binding
K63-linked polyubiquitin binding