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See other SDF4 CNV Assays ›
Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1219447 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03356710_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 5 2128 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK000717.1 3 1150
AK027277.1 BAB55012.1
AK055331.1 1 847
AK075352.1 BAC11563.1
AK126927.1 1 1905
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss DDX11L1 MIR6727 TMEM88B MIR6859-2 LOC107985729 GABRD ANKRD65 LOC105378589 LOC102724312 LOC102725121 DVL1 MXRA8 MRPL20 CFAP74 LOC105378592 SKI LOC105378948 PRKCZ MIR429 LOC107985728 NADK TNFRSF4 ACAP3 FAM132A CDK11A LOC100132287 TMEM240 LOC100506504 MIB2 AURKAIP1 FAM87B LOC100130417 PERM1 MIR6808 OR4F5 MIR6723 LOC107984841 CPSF3L CALML6 LOC105378591 LINC00115 AGRN TAS1R3 CPTP LOC100288175 OR4F16 CCNL2 MMP23B TNFRSF18 UBE2J2 LOC100133331 LOC105378949 HES4 LOC148413 LINC01128 B3GALT6 C1orf159 LOC100287934 FAAP20 TTLL10 SDF4 MIR6859-1 MTND2P28 TMEM52 PUSL1 MMP23A MIR200A SAMD11 MIR6726 LOC101928626 SLC35E2 NOC2L VWA1 FAM41C LOC100288069 OR4F29 SCNN1D LOC100134822 LOC284600 MIR200B FNDC10 KLHL17 GNB1 LOC100129534 TTLL10-AS1 LOC105378947 WASH7P SLC35E2B FAM138A MIR1302-2 ATAD3A MTND1P23 CDK11B LOC729737 PLEKHN1 LINC01342 SSU72 ATAD3C RNF223 ISG15 ATAD3B MORN1
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss B3GALT6 ACAP3 FAM132A MIR6726 SCNN1D SDF4 UBE2J2
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain LOC105378948 SCNN1D MIR429 MIR200A TNFRSF4 B3GALT6 C1orf159 MIR200B LINC01342 FAM132A TTLL10 RNF223 TTLL10-AS1 SDF4 TNFRSF18 UBE2J2
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss SCNN1D MIR429 MIR200A TNFRSF4 B3GALT6 C1orf159 MIR200B ACAP3 LINC01342 FAM132A MIR6726 TTLL10 RNF223 TTLL10-AS1 SDF4 TNFRSF18 UBE2J2
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TNFRSF4 B3GALT6 TTLL10 TTLL10-AS1 SDF4 TNFRSF18
nsv159887 Chr.1:1217713 - 1222580 on Build GRCh38 Deletion SDF4
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain HES4 FAM41C LOC284600 LOC100130417 C1orf159 MIR200B PERM1 KLHL17 TTLL10 TTLL10-AS1 SDF4 LOC105378948 MIR429 LOC107985728 MIR200A AGRN LOC100288175 TNFRSF4 SAMD11 PLEKHN1 LINC01342 RNF223 ISG15 TNFRSF18 NOC2L
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication MIR6727 SCNN1D B3GALT6 C1orf159 MIR200B TTLL10 TTLL10-AS1 SDF4 LOC105378948 CPSF3L PUSL1 MIR429 MIR200A AGRN TAS1R3 CPTP LOC100288175 TNFRSF4 ACAP3 LINC01342 FAM132A MIR6726 RNF223 TNFRSF18 UBE2J2
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss HES4 MIR6727 LOC148413 LINC01128 TMEM88B LOC107985729 ANKRD65 LOC102724312 B3GALT6 DVL1 C1orf159 LOC100287934 MXRA8 TTLL10 MRPL20 SDF4 LOC105378948 PUSL1 MMP23A MIR429 LOC107985728 NADK MIR200A TNFRSF4 SAMD11 ACAP3 FAM132A CDK11A MIR6726 SLC35E2 NOC2L VWA1 TMEM240 FAM41C LOC100288069 MIB2 SCNN1D AURKAIP1 LOC284600 FAM87B LOC100130417 MIR200B PERM1 FNDC10 KLHL17 MIR6808 TTLL10-AS1 SLC35E2B CPSF3L ATAD3A LINC00115 CDK11B AGRN TAS1R3 CPTP LOC100288175 PLEKHN1 CCNL2 MMP23B LINC01342 SSU72 ATAD3C RNF223 ISG15 ATAD3B TNFRSF18 UBE2J2
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss HES4 FAM41C LINC01128 LOC284600 FAM87B LOC100130417 B3GALT6 C1orf159 MIR200B PERM1 KLHL17 TTLL10 TTLL10-AS1 SDF4 LOC105378948 MIR429 LOC107985728 LINC00115 MIR200A AGRN LOC100288175 TNFRSF4 SAMD11 PLEKHN1 LINC01342 FAM132A RNF223 ISG15 TNFRSF18 NOC2L UBE2J2
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TMEM240 MIR6727 LOC148413 MIB2 TMEM88B LOC107985729 SCNN1D ANKRD65 AURKAIP1 LOC102724312 B3GALT6 DVL1 C1orf159 MIR200B FNDC10 MXRA8 TTLL10 MIR6808 MRPL20 TTLL10-AS1 SDF4 CPSF3L PUSL1 ATAD3A MIR429 MIR200A CDK11B TAS1R3 CPTP TNFRSF4 CCNL2 ACAP3 MMP23B LINC01342 FAM132A MIR6726 SSU72 ATAD3C ATAD3B TNFRSF18 UBE2J2 VWA1
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain HES4 MIR6727 LOC148413 TMEM88B SCNN1D ANKRD65 AURKAIP1 LOC284600 LOC100130417 B3GALT6 DVL1 C1orf159 MIR200B PERM1 KLHL17 MXRA8 TTLL10 MIR6808 MRPL20 TTLL10-AS1 SDF4 LOC105378948 CPSF3L PUSL1 MIR429 LOC107985728 MIR200A AGRN TAS1R3 CPTP LOC100288175 TNFRSF4 SAMD11 PLEKHN1 CCNL2 ACAP3 LINC01342 FAM132A MIR6726 RNF223 ISG15 TNFRSF18 NOC2L UBE2J2
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion LOC105378948 HES4 MIR429 MIR200A AGRN LOC100288175 TNFRSF4 SAMD11 C1orf159 MIR200B PLEKHN1 PERM1 KLHL17 LINC01342 TTLL10 RNF223 TTLL10-AS1 ISG15 SDF4 TNFRSF18 NOC2L
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain CPSF3L PUSL1 MIR6727 SCNN1D MIR429 MIR200A TNFRSF4 B3GALT6 MIR200B ACAP3 FAM132A MIR6726 TTLL10 TTLL10-AS1 SDF4 TNFRSF18 UBE2J2

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