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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1544288 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03358775_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK127149.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss TMEM88B LOC107985729 TMEM240 SSU72 ATAD3C LOC102724312 ATAD3B ATAD3A ANKRD65 VWA1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss TMEM88B MIR6727 TNFRSF18 LOC102724312 LOC148413 ATAD3A SLC35E2 LINC01128 MXRA8 LOC100287934 ATAD3C FNDC10 CPTP TTLL10 MIR6726 HES4 UBE2J2 C1orf159 LINC01342 TTLL10-AS1 SCNN1D AURKAIP1 MRPL20 MIR429 AGRN KLHL17 MIR200B PUSL1 CDK11A LOC100130417 TNFRSF4 LOC107985728 FAM87B VWA1 LOC100288175 PLEKHN1 LOC100288069 MIR6808 CDK11B LOC107985729 ACAP3 CPSF3L FAM132A MIR200A ATAD3B MMP23A MIB2 ANKRD65 LOC105378948 NOC2L TAS1R3 SDF4 CCNL2 FAM41C PERM1 SAMD11 LOC284600 LINC00115 RNF223 TMEM240 B3GALT6 SSU72 SLC35E2B DVL1 NADK MMP23B ISG15
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MIR6727 ATAD3A LOC105378949 DDX11L1 SLC35E2 LOC105378592 FNDC10 TTLL10 TMEM52 MIR6726 HES4 UBE2J2 LOC105378591 AURKAIP1 MIR429 KLHL17 MIR200B PUSL1 MIR6859-1 CDK11A LOC100130417 MTND2P28 OR4F16 FAM87B MIR6808 CALML6 LOC101928626 LOC107985729 FAM132A LOC102725121 LOC100132287 MMP23A MIB2 ANKRD65 LOC100134822 NOC2L MIR1302-2 CCNL2 FAM41C SKI LOC284600 LOC105378589 GABRD TMEM240 OR4F5 SLC35E2B DVL1 NADK TMEM88B PRKCZ TNFRSF18 LOC729737 MIR6723 LOC102724312 LOC148413 LINC01128 MXRA8 LOC100287934 ATAD3C CPTP FAAP20 LOC105378947 C1orf159 LINC01342 TTLL10-AS1 SCNN1D MRPL20 AGRN LOC107984841 LOC100133331 TNFRSF4 LOC107985728 VWA1 LOC100288175 PLEKHN1 LOC100288069 CDK11B LOC100129534 ACAP3 GNB1 CPSF3L MIR200A ATAD3B WASH7P LOC105378948 TAS1R3 SDF4 PERM1 MORN1 SAMD11 FAM138A OR4F29 CFAP74 LOC100506504 MIR6859-2 LINC00115 RNF223 MTND1P23 B3GALT6 SSU72 MMP23B ISG15
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TMEM88B MIR6727 TNFRSF18 LOC102724312 LOC148413 ATAD3A MIR6808 CDK11B LOC107985729 ACAP3 MXRA8 CPSF3L FAM132A ATAD3C FNDC10 MIR200A ATAD3B MIB2 CPTP TTLL10 ANKRD65 TAS1R3 SDF4 CCNL2 MIR6726 UBE2J2 C1orf159 LINC01342 TTLL10-AS1 SCNN1D AURKAIP1 MRPL20 MIR429 TMEM240 B3GALT6 SSU72 MIR200B PUSL1 DVL1 TNFRSF4 MMP23B VWA1
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain CCNL2 TMEM88B LOC102724312 LOC148413 ATAD3A MRPL20 LOC107985729 TMEM240 SSU72 ATAD3C ATAD3B ANKRD65 VWA1
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss TMEM88B PRKCZ LOC102724312 LOC148413 ATAD3A LOC105378949 CDK11B CALML6 SLC35E2 LOC107985729 GNB1 ATAD3C FNDC10 ATAD3B MMP23A MIB2 ANKRD65 TMEM52 CCNL2 LOC105378589 GABRD CFAP74 LOC105378591 MRPL20 TMEM240 SSU72 SLC35E2B CDK11A NADK MMP23B VWA1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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