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See other SAMD11 CNV Assays ›
Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:938565 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03358969_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Within Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
BC024295.2 AAH24295.1
CN293867.1
CN342795.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv15n54 Chr.1:934063 - 943937 on Build GRCh38 Loss SAMD11
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain HES4 C1orf159 LOC100130417 ISG15 AGRN KLHL17 LOC284600 SAMD11 PERM1 LOC107985728 NOC2L PLEKHN1 LOC100288175 RNF223 LOC105378948
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss AURKAIP1 PUSL1 MIR429 LINC01342 MTND2P28 LINC01128 MIR1302-2 LOC100506504 FAM87B LOC100130417 ANKRD65 DVL1 MORN1 RNF223 LOC102724312 LOC100133331 LOC107985729 SCNN1D CPSF3L LOC105378947 ATAD3A TTLL10 TAS1R3 MXRA8 PERM1 TMEM240 GNB1 ACAP3 WASH7P LOC100287934 PRKCZ B3GALT6 MIR6859-1 SKI SDF4 FAAP20 MIR6723 FAM41C VWA1 LOC100288175 TNFRSF18 GABRD HES4 CCNL2 LOC102725121 FAM132A UBE2J2 LOC729737 MMP23A MRPL20 ATAD3C LOC105378591 FAM138A LOC100288069 PLEKHN1 LOC100134822 DDX11L1 TTLL10-AS1 LOC107984841 LOC101928626 MIR6726 ISG15 KLHL17 SAMD11 TNFRSF4 OR4F5 OR4F16 NOC2L LINC00115 FNDC10 NADK LOC105378592 LOC105378948 SLC35E2 LOC148413 MIR200A CFAP74 AGRN CALML6 MMP23B LOC100132287 MIR6808 SSU72 SLC35E2B MIR6859-2 MIB2 OR4F29 C1orf159 LOC105378949 MIR200B MTND1P23 MIR6727 LOC284600 LOC100129534 LOC105378589 CDK11A TMEM88B LOC107985728 CPTP ATAD3B TMEM52 CDK11B
esv3584987 Chr.1:938011 - 938662 on Build GRCh38 Loss SAMD11
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion HES4 C1orf159 LOC100130417 ISG15 AGRN KLHL17 LOC284600 SAMD11 PERM1 LOC107985728 NOC2L PLEKHN1 LOC100288175 RNF223 LOC105378948
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion LOC284600 SAMD11 PERM1 LOC107985728 NOC2L PLEKHN1 LOC100130417 KLHL17
dgv8n54 Chr.1:925754 - 943937 on Build GRCh38 Loss SAMD11
esv2663451 Chr.1:938037 - 938669 on Build GRCh38 Deletion SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain HES4 TTLL10 MIR200A MIR429 LINC01342 AGRN PERM1 PLEKHN1 TTLL10-AS1 C1orf159 LOC100130417 ISG15 MIR200B KLHL17 SDF4 LOC284600 SAMD11 TNFRSF4 FAM41C LOC107985728 NOC2L LOC100288175 TNFRSF18 RNF223 LOC105378948
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain HES4 LOC100133331 LOC105378947 AGRN LOC100288069 PERM1 PLEKHN1 MTND2P28 LOC107984841 LINC01128 LOC101928626 C1orf159 FAM87B LOC100130417 ISG15 LOC100287934 MTND1P23 KLHL17 LOC284600 SAMD11 MIR6723 FAM41C OR4F16 LOC107985728 NOC2L LINC00115 LOC100288175 RNF223 LOC105378948
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss HES4 CCNL2 AURKAIP1 FAM132A UBE2J2 MMP23A MRPL20 ATAD3C PUSL1 MIR429 LINC01342 LOC100288069 PLEKHN1 TTLL10-AS1 LINC01128 MIR6726 FAM87B LOC100130417 ISG15 ANKRD65 KLHL17 SAMD11 TNFRSF4 NOC2L LINC00115 FNDC10 DVL1 RNF223 NADK LOC105378948 LOC102724312 SLC35E2 LOC107985729 SCNN1D CPSF3L ATAD3A TTLL10 LOC148413 MIR200A AGRN MMP23B TAS1R3 MXRA8 PERM1 MIR6808 SSU72 TMEM240 SLC35E2B MIB2 C1orf159 ACAP3 MIR200B LOC100287934 B3GALT6 MIR6727 SDF4 LOC284600 CDK11A FAM41C TMEM88B LOC107985728 VWA1 CPTP LOC100288175 TNFRSF18 ATAD3B CDK11B
dgv1n111 Chr.1:690090 - 939522 on Build GRCh38 Duplication LOC100133331 FAM87B LOC100130417 LOC100287934 LOC284600 SAMD11 LOC100288069 FAM41C OR4F16 LOC107985728 LINC00115 LOC107984841 LINC01128
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss HES4 FAM132A UBE2J2 TTLL10 MIR200A MIR429 LINC01342 AGRN PERM1 PLEKHN1 TTLL10-AS1 LINC01128 C1orf159 FAM87B LOC100130417 ISG15 MIR200B B3GALT6 KLHL17 SDF4 LOC284600 SAMD11 TNFRSF4 FAM41C LOC107985728 NOC2L LINC00115 LOC100288175 TNFRSF18 RNF223 LOC105378948
dgv3n111 Chr.1:783283 - 939522 on Build GRCh38 Duplication LOC284600 SAMD11 FAM41C LOC107985728 LINC00115 FAM87B LOC100130417 LOC100287934 LINC01128
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain HES4 CCNL2 SCNN1D CPSF3L AURKAIP1 FAM132A UBE2J2 MRPL20 TTLL10 PUSL1 LOC148413 MIR200A MIR429 LINC01342 AGRN TAS1R3 MXRA8 PERM1 MIR6808 PLEKHN1 TTLL10-AS1 MIR6726 C1orf159 ACAP3 LOC100130417 ISG15 MIR200B ANKRD65 B3GALT6 KLHL17 MIR6727 SDF4 LOC284600 SAMD11 TNFRSF4 TMEM88B LOC107985728 NOC2L CPTP DVL1 LOC100288175 TNFRSF18 RNF223 LOC105378948
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss LOC284600 HES4 SAMD11 PERM1 LOC107985728 NOC2L PLEKHN1 LOC100130417 ISG15 AGRN KLHL17
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain LOC284600 HES4 SAMD11 FAM41C PERM1 LOC107985728 NOC2L PLEKHN1 LOC100130417 LINC01128 KLHL17
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain SAMD11 LOC107985728

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:


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