Hs03359162_cn

• Gene Symbol: FAAP20
• Assay Reference Genome Location: Chr.1:2210729 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 199990
• Gene Name: Fanconi anemia core complex associated protein 20
• Gene Aliases: C1orf86, FP7162
• Location: Chr.1:2184460-2212720 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAAP20	NM_001282670.1			NP_001269599.1
	AK126870.1			BAC86730.1

Target Gene Details

• Entrez Gene ID: 105378592
• Gene Name: uncharacterized LOC105378592
• Gene Aliases: -
• Location: Chr.1:2207597-2215193 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105378592	XM_017003076.1			XP_016858565.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	OR4F29 MTND1P23 ATAD3A OR4F16 NOC2L MIR6859-1 MMP23A SSU72 WASH7P LOC100133331 LOC105378589 PLEKHN1 MIR6726 FAM41C LOC100130417 B3GALT6 CDK11B NADK MIR429 GNB1 FAM132A SLC35E2 CFAP74 LOC148413 PERM1 ATAD3B SCNN1D MORN1 MIR1302-2 MIB2 LOC107984841 LOC105378592 CCNL2 LOC100134822 AGRN LOC105378948 MIR6727 CALML6 CDK11A TTLL10 CPTP ATAD3C CPSF3L SAMD11 LOC105378947 AURKAIP1 LOC284600 MXRA8 TMEM52 LINC01128 LOC100288175 MMP23B SDF4 LOC100132287 LOC107985728 DVL1 TMEM88B TMEM240 ACAP3 UBE2J2 FNDC10 DDX11L1 LINC00115 RNF223 LOC102724312 LOC102725121 KLHL17 TAS1R3 LOC107985729 MIR6723 LOC105378949 LOC100287934 FAM87B TTLL10-AS1 TNFRSF4 LOC100288069 C1orf159 LINC01342 PUSL1 SLC35E2B TNFRSF18 HES4 MTND2P28 LOC729737 ANKRD65 ISG15 LOC101928626 GABRD LOC105378591 LOC100506504 MIR200A MIR6859-2 LOC100129534 FAM138A FAAP20 PRKCZ SKI MIR6808 MRPL20 OR4F5 VWA1 MIR200B
dgv49n54	Chr.1:2151050 - 2289783 on Build GRCh38	Loss	LOC100506504 FAAP20 PRKCZ SKI LOC105378592
nsv951530	Chr.1:2153662 - 2229961 on Build GRCh38	Deletion	LOC100506504 FAAP20 PRKCZ SKI LOC105378592
nsv470682	Chr.1:2188394 - 2378754 on Build GRCh38	Loss	FAAP20 MORN1 SKI LOC105378592 LOC100129534
nsv834557	Chr.1:2117631 - 2311104 on Build GRCh38	Loss	LOC100506504 FAAP20 PRKCZ SKI LOC105378592
nsv818111	Chr.1:2208822 - 2224923 on Build GRCh38	Loss	FAAP20 LOC105378592

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cellular response to DNA damage stimulus
translesion synthesis
interstrand cross-link repair

Function(s)

protein binding
polyubiquitin binding
ubiquitin binding
metal ion binding
K63-linked polyubiquitin binding