Hs03359162_cn

• Gene Symbol: FAAP20
• Assay Reference Genome Location: Chr.1:2210729 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 199990
• Gene Name: Fanconi anemia core complex associated protein 20
• Gene Aliases: C1orf86, FP7162
• Location: Chr.1:2184460-2212720 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAAP20	NM_001282670.1			NP_001269599.1
	AK126870.1			BAC86730.1

Target Gene Details

• Entrez Gene ID: 105378592
• Gene Name: uncharacterized LOC105378592
• Gene Aliases: -
• Location: Chr.1:2207597-2215193 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105378592	XM_017003076.1			XP_016858565.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv461727	Chr.1:2151050 - 2251031 on Build GRCh38	Loss	FAAP20 LOC100506504 LOC105378592 PRKCZ SKI
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	CDK11A DDX11L1 ANKRD65 LOC105378592 LOC100288175 ATAD3A LINC01128 MIR200B MMP23A LOC100288069 LOC100506504 NOC2L SSU72 MTND1P23 CDK11B LOC729737 MRPL20 LOC100133331 WASH7P VWA1 LOC102724312 LOC107985728 LOC105378949 TMEM52 MIB2 ATAD3B CCNL2 TNFRSF4 SLC35E2B MIR1302-2 SAMD11 ISG15 MIR429 TTLL10-AS1 TNFRSF18 MIR6727 LOC100129534 UBE2J2 LOC101928626 MIR6723 SLC35E2 PLEKHN1 LOC105378589 FAAP20 B3GALT6 TMEM240 LOC107984841 MIR6859-2 MORN1 AURKAIP1 GABRD FAM41C PUSL1 LOC105378948 TAS1R3 MIR6726 SDF4 HES4 LOC100287934 FAM138A LOC100134822 TMEM88B CPSF3L FAM132A SCNN1D MIR200A PERM1 MIR6859-1 MXRA8 LOC284600 CFAP74 SKI OR4F29 MMP23B LOC100130417 OR4F5 KLHL17 ACAP3 PRKCZ LINC01342 LOC148413 CPTP NADK TTLL10 MIR6808 GNB1 FNDC10 LINC00115 MTND2P28 LOC105378947 FAM87B AGRN C1orf159 RNF223 LOC102725121 OR4F16 LOC107985729 CALML6 LOC100132287 LOC105378591 DVL1 ATAD3C
nsv951530	Chr.1:2153662 - 2229961 on Build GRCh38	Deletion	FAAP20 LOC100506504 LOC105378592 PRKCZ SKI
nsv470682	Chr.1:2188394 - 2378754 on Build GRCh38	Loss	FAAP20 LOC100129534 LOC105378592 MORN1 SKI
nsv545067	Chr.1:2208822 - 2263678 on Build GRCh38	Loss	FAAP20 LOC105378592 SKI
nsv834557	Chr.1:2117631 - 2311104 on Build GRCh38	Loss	FAAP20 LOC100506504 LOC105378592 PRKCZ SKI

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cellular response to DNA damage stimulus
translesion synthesis
interstrand cross-link repair

Function(s)

protein binding
polyubiquitin binding
ubiquitin binding
metal ion binding
K63-linked polyubiquitin binding