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See other SDF4 CNV Assays ›
Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1228986 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03359485_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
DC405714.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication AGRN MIR200A TAS1R3 LOC105378948 TTLL10 RNF223 UBE2J2 MIR6727 CPSF3L MIR6726 MIR200B MIR429 TNFRSF4 FAM132A TNFRSF18 LINC01342 B3GALT6 SCNN1D TTLL10-AS1 CPTP C1orf159 PUSL1 LOC100288175 ACAP3 SDF4
nsv821698 Chr.1:1228970 - 1234390 on Build GRCh38 Gain B3GALT6 SDF4
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MIB2 AGRN MIR200A TAS1R3 CDK11B MMP23B SAMD11 LOC100288069 LOC105378948 PLEKHN1 UBE2J2 MIR6726 SSU72 LOC107985728 AURKAIP1 KLHL17 TNFRSF4 FAM87B PERM1 FAM132A TNFRSF18 LINC01342 LOC100130417 B3GALT6 MRPL20 TMEM240 SLC35E2 TTLL10-AS1 DVL1 CPTP C1orf159 ATAD3C CDK11A VWA1 LOC107985729 TMEM88B SDF4 FAM41C ANKRD65 NOC2L MMP23A MXRA8 TTLL10 CCNL2 RNF223 LOC100287934 MIR6727 CPSF3L LOC102724312 MIR200B MIR429 ATAD3A NADK SLC35E2B LINC01128 ISG15 ATAD3B SCNN1D HES4 LOC284600 LOC148413 MIR6808 PUSL1 LOC100288175 ACAP3 LINC00115 FNDC10
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MIB2 AGRN MTND1P23 CDK11B LOC100288069 PLEKHN1 WASH7P MORN1 MIR6859-2 FAM132A TNFRSF18 LINC01342 B3GALT6 TMEM240 CALML6 DDX11L1 PRKCZ TTLL10-AS1 DVL1 LOC101928626 C1orf159 ATAD3C GABRD TMEM88B SDF4 FAM41C NOC2L LOC105378592 TTLL10 LOC100506504 RNF223 LOC100287934 MIR6727 LOC105378949 OR4F16 MIR429 NADK ATAD3B SCNN1D HES4 OR4F5 LOC284600 LOC148413 LOC100134822 PUSL1 LOC100288175 ACAP3 FNDC10 FAM138A LOC105378947 MIR200A LOC105378591 TAS1R3 TMEM52 MMP23B SAMD11 LOC105378948 UBE2J2 LOC107984841 MIR6726 CFAP74 SSU72 LOC107985728 AURKAIP1 KLHL17 MIR6723 TNFRSF4 FAM87B PERM1 LOC100130417 MRPL20 FAAP20 SKI SLC35E2 CPTP CDK11A VWA1 LOC107985729 LOC100133331 ANKRD65 LOC105378589 OR4F29 MMP23A MXRA8 CCNL2 CPSF3L LOC100129534 LOC102724312 MIR200B ATAD3A SLC35E2B LINC01128 LOC729737 ISG15 LOC100132287 GNB1 MIR1302-2 LOC102725121 MIR6808 MTND2P28 LINC00115 MIR6859-1
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss UBE2J2 FAM132A MIR6726 ACAP3 B3GALT6 SCNN1D SDF4
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss FAM41C NOC2L AGRN MIR200A SAMD11 LOC105378948 TTLL10 RNF223 PLEKHN1 UBE2J2 MIR200B LOC107985728 MIR429 KLHL17 TNFRSF4 FAM87B PERM1 FAM132A TNFRSF18 LINC01342 LINC01128 LOC100130417 ISG15 B3GALT6 HES4 LOC284600 TTLL10-AS1 C1orf159 LOC100288175 LINC00115 SDF4
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MIB2 ANKRD65 MIR200A TAS1R3 CDK11B MMP23B MXRA8 TTLL10 CCNL2 UBE2J2 MIR6727 CPSF3L MIR6726 LOC102724312 SSU72 MIR200B AURKAIP1 MIR429 ATAD3A TNFRSF4 FAM132A TNFRSF18 LINC01342 B3GALT6 MRPL20 ATAD3B SCNN1D TMEM240 LOC148413 TTLL10-AS1 DVL1 CPTP C1orf159 ATAD3C MIR6808 PUSL1 VWA1 ACAP3 LOC107985729 FNDC10 TMEM88B SDF4
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain ANKRD65 NOC2L AGRN MIR200A TAS1R3 MXRA8 SAMD11 LOC105378948 TTLL10 CCNL2 RNF223 PLEKHN1 UBE2J2 MIR6727 CPSF3L MIR6726 MIR200B LOC107985728 AURKAIP1 MIR429 KLHL17 TNFRSF4 PERM1 FAM132A TNFRSF18 LINC01342 LOC100130417 ISG15 B3GALT6 MRPL20 SCNN1D HES4 LOC284600 LOC148413 TTLL10-AS1 DVL1 CPTP C1orf159 MIR6808 PUSL1 LOC100288175 ACAP3 TMEM88B SDF4
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain TNFRSF4 MIR200A FAM132A TNFRSF18 LINC01342 B3GALT6 LOC105378948 SCNN1D TTLL10 RNF223 UBE2J2 TTLL10-AS1 C1orf159 MIR200B MIR429 SDF4
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss TNFRSF4 MIR200A FAM132A TNFRSF18 LINC01342 B3GALT6 SCNN1D TTLL10 RNF223 UBE2J2 TTLL10-AS1 MIR6726 C1orf159 MIR200B MIR429 ACAP3 SDF4
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain TNFRSF4 MIR200A FAM132A TNFRSF18 B3GALT6 SCNN1D TTLL10 UBE2J2 TTLL10-AS1 MIR6727 CPSF3L MIR6726 MIR200B PUSL1 MIR429 ACAP3 SDF4
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TNFRSF4 TTLL10-AS1 TNFRSF18 B3GALT6 TTLL10 SDF4

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