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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1551211 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03360814_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss TMEM240 ATAD3A TMEM88B ATAD3C LOC107985729 SSU72 ATAD3B ANKRD65 VWA1 LOC102724312
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss C1orf159 CPTP CDK11B MRPL20 FAM87B AURKAIP1 TTLL10 MIR200B B3GALT6 CPSF3L KLHL17 LOC148413 MIR6808 VWA1 AGRN SLC35E2B FNDC10 MIR6726 LOC105378948 SLC35E2 MIB2 LINC01128 MMP23A HES4 ANKRD65 LOC107985728 PUSL1 MXRA8 SDF4 PLEKHN1 SCNN1D TNFRSF18 ISG15 UBE2J2 LOC100288069 LOC100130417 ATAD3A MMP23B MIR200A NADK LOC107985729 SSU72 FAM41C LOC100287934 MIR6727 LINC01342 LINC00115 LOC284600 MIR429 NOC2L RNF223 CCNL2 TMEM240 ACAP3 ATAD3C FAM132A TNFRSF4 TTLL10-AS1 LOC102724312 PERM1 TAS1R3 TMEM88B ATAD3B SAMD11 CDK11A DVL1 LOC100288175
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss CDK11B LOC105378947 MRPL20 TTLL10 MIR200B MIR6808 VWA1 AGRN SLC35E2B SLC35E2 CALML6 MMP23A HES4 LOC105378589 LOC107985728 MXRA8 LOC102725121 SDF4 SKI OR4F29 LOC100506504 LOC105378591 MIR1302-2 UBE2J2 LOC100288069 LOC100130417 GNB1 FAM41C MIR6727 LINC01342 CFAP74 MIR429 RNF223 CCNL2 WASH7P ATAD3C FAM132A LOC105378949 TNFRSF4 LOC100129534 PERM1 TAS1R3 TMEM88B ATAD3B SAMD11 CDK11A DVL1 OR4F5 C1orf159 CPTP FAM138A FAM87B AURKAIP1 B3GALT6 GABRD CPSF3L MORN1 KLHL17 LOC107984841 LOC148413 FAAP20 FNDC10 MIR6726 LOC105378948 MIR6859-1 MIB2 LINC01128 ANKRD65 PUSL1 PLEKHN1 MIR6723 SCNN1D TNFRSF18 ISG15 TMEM52 LOC100133331 ATAD3A OR4F16 MMP23B MIR200A NADK LOC100134822 MTND2P28 LOC107985729 SSU72 LOC100287934 LINC00115 LOC284600 NOC2L PRKCZ TMEM240 ACAP3 DDX11L1 MTND1P23 TTLL10-AS1 LOC102724312 MIR6859-2 LOC729737 LOC101928626 LOC100132287 LOC100288175 LOC105378592
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion C1orf159 CPTP ATAD3A MMP23B MIR200A CDK11B LOC107985729 SSU72 MRPL20 MIR6727 AURKAIP1 LINC01342 TTLL10 MIR200B B3GALT6 CPSF3L MIR429 LOC148413 MIR6808 VWA1 CCNL2 FNDC10 MIR6726 TMEM240 ACAP3 MIB2 ATAD3C FAM132A TNFRSF4 TTLL10-AS1 ANKRD65 LOC102724312 PUSL1 MXRA8 TAS1R3 SDF4 TMEM88B SCNN1D TNFRSF18 ATAD3B DVL1 UBE2J2
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain TMEM240 ATAD3A ATAD3C LOC107985729 SSU72 ANKRD65 MRPL20 LOC102724312 TMEM88B ATAD3B LOC148413 VWA1 CCNL2
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss ATAD3A MMP23B GNB1 NADK CDK11B LOC107985729 SSU72 MRPL20 CFAP74 GABRD LOC148413 PRKCZ VWA1 CCNL2 SLC35E2B FNDC10 TMEM240 SLC35E2 MIB2 CALML6 MMP23A ATAD3C LOC105378589 LOC105378949 ANKRD65 LOC102724312 TMEM88B LOC105378591 ATAD3B CDK11A TMEM52

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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