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See other SDF4 CNV Assays ›
Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1225398 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03363135_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication AGRN B3GALT6 UBE2J2 TAS1R3 LOC100288175 TTLL10-AS1 LINC01342 CPSF3L MIR200A LOC105378948 TTLL10 FAM132A RNF223 CPTP MIR200B C1orf159 MIR6726 TNFRSF18 ACAP3 PUSL1 MIR6727 SCNN1D TNFRSF4 SDF4 MIR429
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss AGRN B3GALT6 LOC284600 TMEM88B LINC00115 SSU72 SLC35E2B KLHL17 TMEM240 HES4 LINC01342 LOC100130417 ATAD3B FAM132A RNF223 MIR6808 CPTP PLEKHN1 MIR200B MIB2 MMP23B C1orf159 CDK11A MMP23A ACAP3 PERM1 LOC107985729 FAM41C PUSL1 LOC100287934 LOC100288069 SCNN1D SDF4 NOC2L LINC01128 LOC102724312 UBE2J2 MXRA8 MRPL20 ANKRD65 LOC148413 TAS1R3 FAM87B LOC100288175 TTLL10-AS1 CDK11B SAMD11 SLC35E2 VWA1 CPSF3L MIR200A ATAD3C LOC105378948 TTLL10 AURKAIP1 CCNL2 NADK MIR6726 TNFRSF18 FNDC10 LOC107985728 ISG15 MIR6727 TNFRSF4 ATAD3A DVL1 MIR429
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC284600 TMEM88B LOC100506504 SSU72 KLHL17 HES4 LOC100130417 ATAD3B FAM132A RNF223 CPTP MIB2 LOC105378947 OR4F16 FAM41C PUSL1 LOC100287934 LOC101928626 SDF4 LINC01128 LOC102724312 MRPL20 FAM87B LOC729737 CDK11B PRKCZ MORN1 SKI VWA1 CPSF3L LOC105378948 LOC105378589 AURKAIP1 LOC100129534 OR4F29 MIR6859-1 GNB1 FNDC10 ISG15 MIR6727 TNFRSF4 ATAD3A AGRN B3GALT6 LINC00115 LOC105378591 LOC100132287 CFAP74 SLC35E2B TMEM240 MTND2P28 GABRD LINC01342 CALML6 MIR6808 PLEKHN1 MIR200B LOC102725121 MMP23B C1orf159 CDK11A LOC100134822 MIR6859-2 MMP23A ACAP3 MTND1P23 MIR1302-2 PERM1 LOC107985729 LOC100133331 LOC100288069 TMEM52 SCNN1D NOC2L LOC107984841 UBE2J2 MXRA8 ANKRD65 LOC148413 TAS1R3 FAAP20 LOC100288175 TTLL10-AS1 SAMD11 SLC35E2 MIR6723 MIR200A ATAD3C TTLL10 OR4F5 CCNL2 WASH7P NADK MIR6726 TNFRSF18 DDX11L1 FAM138A LOC107985728 LOC105378592 DVL1 MIR429 LOC105378949
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss MIR6726 B3GALT6 ACAP3 UBE2J2 FAM132A SCNN1D SDF4
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss AGRN LINC01128 B3GALT6 LOC284600 UBE2J2 LINC00115 FAM87B LOC100288175 KLHL17 TTLL10-AS1 SAMD11 HES4 LINC01342 MIR200A LOC100130417 LOC105378948 TTLL10 FAM132A RNF223 PLEKHN1 MIR200B C1orf159 TNFRSF18 PERM1 FAM41C LOC107985728 ISG15 TNFRSF4 SDF4 MIR429 NOC2L
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion B3GALT6 TMEM88B LOC102724312 UBE2J2 MXRA8 MRPL20 ANKRD65 LOC148413 SSU72 TAS1R3 TTLL10-AS1 CDK11B TMEM240 LINC01342 VWA1 CPSF3L MIR200A ATAD3B ATAD3C TTLL10 FAM132A MIR6808 AURKAIP1 CPTP MIR200B CCNL2 MIB2 MMP23B C1orf159 MIR6726 TNFRSF18 ACAP3 FNDC10 LOC107985729 PUSL1 MIR6727 SCNN1D TNFRSF4 ATAD3A DVL1 SDF4 MIR429
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain AGRN B3GALT6 LOC284600 TMEM88B UBE2J2 MXRA8 MRPL20 ANKRD65 LOC148413 TAS1R3 LOC100288175 KLHL17 TTLL10-AS1 SAMD11 HES4 LINC01342 CPSF3L MIR200A LOC100130417 LOC105378948 TTLL10 FAM132A RNF223 MIR6808 AURKAIP1 CPTP PLEKHN1 MIR200B CCNL2 C1orf159 MIR6726 TNFRSF18 ACAP3 PERM1 PUSL1 LOC107985728 ISG15 MIR6727 SCNN1D TNFRSF4 DVL1 SDF4 MIR429 NOC2L
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain MIR200A B3GALT6 LOC105378948 TTLL10 UBE2J2 FAM132A RNF223 MIR200B C1orf159 TTLL10-AS1 TNFRSF18 SCNN1D TNFRSF4 SDF4 MIR429 LINC01342
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss MIR200A B3GALT6 TTLL10 UBE2J2 FAM132A RNF223 MIR200B C1orf159 TTLL10-AS1 MIR6726 TNFRSF18 ACAP3 SCNN1D TNFRSF4 SDF4 MIR429 LINC01342
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain CPSF3L MIR200A B3GALT6 TTLL10 UBE2J2 FAM132A MIR200B TTLL10-AS1 MIR6726 TNFRSF18 ACAP3 PUSL1 MIR6727 SCNN1D TNFRSF4 SDF4 MIR429
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss B3GALT6 TNFRSF18 TTLL10 TNFRSF4 SDF4 TTLL10-AS1

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