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See other SDF4 CNV Assays ›
Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1220258 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03363496_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 5 1317 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK000717.1
AK027277.1 BAB55012.1
AK055331.1 1 36
AK075352.1 BAC11563.1
AK126927.1 1 1094
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss FAM41C LOC100130417 MIR6808 LOC107984841 PERM1 MIR200B SSU72 FNDC10 GNB1 ISG15 CPSF3L ACAP3 TMEM88B SDF4 LOC102725121 AURKAIP1 CFAP74 LOC284600 FAAP20 ANKRD65 TTLL10-AS1 FAM138A LOC100288175 MIR200A PLEKHN1 MIR6723 WASH7P MTND1P23 TMEM52 DDX11L1 LINC01342 LOC100129534 HES4 LOC100132287 LOC100133331 MMP23A MRPL20 LOC100287934 MIR6726 LOC105378591 VWA1 LOC107985729 CCNL2 LOC105378589 SKI PUSL1 FAM132A MXRA8 ATAD3B TMEM240 TTLL10 LOC105378948 LOC100288069 KLHL17 CDK11B TNFRSF4 TAS1R3 DVL1 MIR429 LOC729737 LOC107985728 ATAD3C SAMD11 AGRN MIR1302-2 B3GALT6 LOC105378947 SLC35E2B SCNN1D MMP23B LOC105378949 SLC35E2 LOC100506504 MIR6859-2 NADK CALML6 MIB2 C1orf159 LOC102724312 LOC101928626 MIR6727 LINC00115 MIR6859-1 CPTP MORN1 FAM87B TNFRSF18 GABRD NOC2L OR4F5 UBE2J2 LINC01128 CDK11A RNF223 LOC148413 ATAD3A MTND2P28 LOC100134822 PRKCZ OR4F16 LOC105378592 OR4F29
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss MIR6726 ACAP3 UBE2J2 FAM132A B3GALT6 SDF4 SCNN1D
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain LINC01342 UBE2J2 FAM132A RNF223 SDF4 C1orf159 TTLL10 LOC105378948 MIR200B TTLL10-AS1 MIR200A B3GALT6 TNFRSF4 SCNN1D TNFRSF18 MIR429
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss LINC01342 ACAP3 UBE2J2 FAM132A RNF223 SDF4 C1orf159 TTLL10 MIR6726 MIR200B TTLL10-AS1 MIR200A B3GALT6 TNFRSF4 SCNN1D TNFRSF18 MIR429
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10-AS1 B3GALT6 TNFRSF4 SDF4 TNFRSF18 TTLL10
nsv159887 Chr.1:1217713 - 1222580 on Build GRCh38 Deletion SDF4
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain C1orf159 FAM41C LOC100130417 TTLL10 LOC284600 PERM1 LOC105378948 MIR200B TTLL10-AS1 LOC100288175 MIR200A PLEKHN1 KLHL17 TNFRSF4 TNFRSF18 NOC2L MIR429 LOC107985728 ISG15 LINC01342 HES4 SAMD11 AGRN RNF223 SDF4
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication PUSL1 FAM132A C1orf159 TTLL10 LOC105378948 MIR200B TTLL10-AS1 LOC100288175 MIR6727 MIR200A CPTP TNFRSF4 TAS1R3 TNFRSF18 MIR429 CPSF3L LINC01342 ACAP3 UBE2J2 AGRN RNF223 SDF4 MIR6726 B3GALT6 SCNN1D
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss PUSL1 FAM132A MXRA8 ATAD3B TMEM240 FAM41C LOC100130417 TTLL10 MIR6808 PERM1 LOC105378948 MIR200B SSU72 LOC100288069 FNDC10 KLHL17 CDK11B TNFRSF4 TAS1R3 DVL1 MIR429 LOC107985728 ISG15 ATAD3C CPSF3L ACAP3 SAMD11 AGRN TMEM88B SDF4 B3GALT6 SLC35E2B SCNN1D AURKAIP1 MMP23B SLC35E2 NADK MIB2 C1orf159 LOC284600 LOC102724312 ANKRD65 TTLL10-AS1 LOC100288175 MIR6727 LINC00115 MIR200A PLEKHN1 CPTP FAM87B TNFRSF18 NOC2L LINC01342 HES4 UBE2J2 LINC01128 CDK11A RNF223 LOC148413 ATAD3A MMP23A MRPL20 LOC100287934 MIR6726 VWA1 LOC107985729 CCNL2
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss FAM132A C1orf159 FAM41C LOC100130417 TTLL10 LOC284600 PERM1 LOC105378948 MIR200B TTLL10-AS1 LOC100288175 LINC00115 MIR200A PLEKHN1 KLHL17 TNFRSF4 FAM87B TNFRSF18 NOC2L MIR429 LOC107985728 ISG15 LINC01342 HES4 UBE2J2 LINC01128 SAMD11 AGRN RNF223 SDF4 B3GALT6
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MMP23B PUSL1 FAM132A MXRA8 ATAD3B MIB2 TMEM240 C1orf159 TTLL10 MIR6808 LOC102724312 MIR200B ANKRD65 TTLL10-AS1 SSU72 MIR6727 MIR200A FNDC10 CPTP CDK11B TNFRSF4 TAS1R3 TNFRSF18 DVL1 MIR429 ATAD3C CPSF3L LINC01342 ACAP3 UBE2J2 LOC148413 ATAD3A TMEM88B SDF4 MRPL20 MIR6726 B3GALT6 VWA1 LOC107985729 SCNN1D CCNL2 AURKAIP1
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain PUSL1 FAM132A MXRA8 C1orf159 LOC100130417 TTLL10 LOC284600 MIR6808 PERM1 LOC105378948 MIR200B ANKRD65 TTLL10-AS1 LOC100288175 MIR6727 MIR200A PLEKHN1 KLHL17 CPTP TNFRSF4 TAS1R3 TNFRSF18 DVL1 NOC2L MIR429 LOC107985728 ISG15 CPSF3L LINC01342 ACAP3 HES4 UBE2J2 SAMD11 AGRN RNF223 LOC148413 TMEM88B SDF4 MRPL20 MIR6726 B3GALT6 SCNN1D CCNL2 AURKAIP1
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion ISG15 LINC01342 HES4 SAMD11 AGRN RNF223 SDF4 C1orf159 TTLL10 PERM1 LOC105378948 MIR200B TTLL10-AS1 LOC100288175 MIR200A PLEKHN1 KLHL17 TNFRSF4 TNFRSF18 NOC2L MIR429
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain CPSF3L ACAP3 PUSL1 UBE2J2 FAM132A SDF4 TTLL10 MIR6726 MIR200B TTLL10-AS1 MIR6727 MIR200A B3GALT6 TNFRSF4 SCNN1D TNFRSF18 MIR429

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