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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1561714 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03363980_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK129493.1 1 353
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss ANKRD65 SSU72 ATAD3A TMEM240 TMEM88B LOC102724312 VWA1 ATAD3B ATAD3C LOC107985729
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss AURKAIP1 MIR200A TMEM88B LOC100288069 MIR6726 SLC35E2 MMP23A PUSL1 NADK MXRA8 ATAD3A LOC284600 SAMD11 FNDC10 KLHL17 LINC01128 MIR6727 C1orf159 ANKRD65 FAM87B MIB2 LOC107985728 MMP23B PLEKHN1 LOC100287934 LOC107985729 AGRN NOC2L ATAD3B ACAP3 B3GALT6 LINC00115 LOC148413 TNFRSF4 TTLL10-AS1 TMEM240 LOC102724312 TTLL10 MRPL20 DVL1 TNFRSF18 FAM41C CPSF3L LOC100288175 CCNL2 LOC100130417 SCNN1D ATAD3C MIR200B PERM1 MIR429 CDK11B UBE2J2 SSU72 RNF223 VWA1 SLC35E2B FAM132A TAS1R3 HES4 LOC105378948 LINC01342 CPTP ISG15 MIR6808 SDF4 CDK11A
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100132287 AURKAIP1 TMEM88B SKI SLC35E2 MIR6859-2 MMP23A PUSL1 NADK ATAD3A LOC284600 FNDC10 MTND1P23 CALML6 GNB1 C1orf159 ANKRD65 FAM138A DDX11L1 LOC107985728 MMP23B LOC100287934 AGRN NOC2L LOC105378949 LINC00115 LOC148413 MORN1 GABRD LOC102724312 MIR1302-2 CFAP74 CCNL2 LOC100130417 SCNN1D ATAD3C OR4F5 LOC100506504 LOC107984841 CDK11B SSU72 SLC35E2B LOC100133331 TAS1R3 FAAP20 LINC01342 ISG15 SDF4 LOC105378947 CDK11A MIR200A LOC100288069 MIR6726 LOC100129534 OR4F16 MXRA8 LOC105378589 SAMD11 KLHL17 LOC105378591 LINC01128 MIR6727 MTND2P28 FAM87B MIB2 PLEKHN1 LOC729737 WASH7P LOC107985729 MIR6859-1 ATAD3B OR4F29 ACAP3 B3GALT6 PRKCZ TNFRSF4 TTLL10-AS1 TMEM240 TTLL10 MRPL20 DVL1 TNFRSF18 FAM41C LOC100134822 CPSF3L LOC100288175 MIR6723 LOC105378592 LOC102725121 TMEM52 MIR200B LOC101928626 PERM1 MIR429 UBE2J2 RNF223 VWA1 FAM132A HES4 LOC105378948 CPTP MIR6808
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TNFRSF4 TTLL10-AS1 AURKAIP1 TMEM240 MIR200A TMEM88B LOC102724312 TTLL10 MIR6726 MRPL20 DVL1 TNFRSF18 PUSL1 CPSF3L MXRA8 ATAD3A CCNL2 SCNN1D ATAD3C FNDC10 MIR200B MIR6727 C1orf159 ANKRD65 MIR429 CDK11B UBE2J2 SSU72 MIB2 VWA1 MMP23B LOC107985729 FAM132A TAS1R3 LINC01342 CPTP MIR6808 ATAD3B SDF4 ACAP3 B3GALT6 LOC148413
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain ANKRD65 SSU72 TMEM240 TMEM88B LOC102724312 VWA1 MRPL20 LOC107985729 ATAD3A CCNL2 ATAD3B ATAD3C LOC148413
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss GABRD TMEM240 TMEM88B LOC102724312 SLC35E2 MRPL20 MMP23A CFAP74 NADK ATAD3A CCNL2 LOC105378589 ATAD3C FNDC10 TMEM52 LOC105378591 CALML6 GNB1 ANKRD65 CDK11B SSU72 MIB2 VWA1 MMP23B SLC35E2B LOC107985729 ATAD3B LOC105378949 CDK11A LOC148413 PRKCZ

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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