Hs03365830_cn

• Gene Symbol: FAAP20
• Assay Reference Genome Location: Chr.1:2212301 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 199990
• Gene Name: Fanconi anemia core complex associated protein 20
• Gene Aliases: C1orf86, FP7162
• Location: Chr.1:2184460-2212720 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAAP20	NM_001282670.1			NP_001269599.1
	AK126870.1			BAC86730.1

Target Gene Details

• Entrez Gene ID: 105378592
• Gene Name: uncharacterized LOC105378592
• Gene Aliases: -
• Location: Chr.1:2207597-2215193 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105378592	XM_017003076.1			XP_016858565.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	UBE2J2 LOC107984841 FAM138A MIR200A MIR6723 ATAD3C MXRA8 TMEM52 MIR200B LINC01342 AURKAIP1 MTND1P23 FAAP20 LOC105378589 OR4F29 MMP23A MIR429 LOC100287934 DVL1 SKI SDF4 MIR1302-2 GNB1 SSU72 LOC284600 NOC2L LOC100129534 ATAD3B MIR6859-1 LOC100288069 LOC148413 SAMD11 LINC01128 SCNN1D TMEM88B RNF223 LOC101928626 DDX11L1 ISG15 OR4F16 ACAP3 TTLL10 TNFRSF18 MIR6859-2 LOC105378948 FNDC10 LOC100506504 NADK PLEKHN1 SLC35E2B LOC100132287 MORN1 KLHL17 FAM41C FAM132A WASH7P CDK11A MIR6727 TAS1R3 PERM1 LOC107985729 LOC100130417 MTND2P28 SLC35E2 TTLL10-AS1 MMP23B C1orf159 GABRD CPTP LOC102724312 CALML6 OR4F5 LOC100134822 ANKRD65 LOC100133331 LOC105378592 LOC102725121 LOC105378947 TNFRSF4 MIR6726 VWA1 LINC00115 HES4 LOC105378949 B3GALT6 CDK11B LOC729737 PUSL1 TMEM240 LOC107985728 AGRN MIR6808 MIB2 PRKCZ MRPL20 FAM87B CFAP74 LOC105378591 ATAD3A CCNL2 LOC100288175 CPSF3L
dgv49n54	Chr.1:2151050 - 2289783 on Build GRCh38	Loss	LOC100506504 PRKCZ SKI FAAP20 LOC105378592
nsv951530	Chr.1:2153662 - 2229961 on Build GRCh38	Deletion	LOC100506504 PRKCZ SKI FAAP20 LOC105378592
nsv470682	Chr.1:2188394 - 2378754 on Build GRCh38	Loss	MORN1 SKI FAAP20 LOC100129534 LOC105378592
nsv834557	Chr.1:2117631 - 2311104 on Build GRCh38	Loss	LOC100506504 PRKCZ SKI FAAP20 LOC105378592
nsv818111	Chr.1:2208822 - 2224923 on Build GRCh38	Loss	FAAP20 LOC105378592

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cellular response to DNA damage stimulus
translesion synthesis
interstrand cross-link repair

Function(s)

protein binding
polyubiquitin binding
ubiquitin binding
metal ion binding
K63-linked polyubiquitin binding