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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1561477 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03366752_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK129493.1 1 590
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss LOC107985729 ANKRD65 ATAD3C VWA1 SSU72 ATAD3B TMEM240 ATAD3A LOC102724312 TMEM88B
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss DVL1 TAS1R3 LOC100287934 TMEM240 FNDC10 LOC100130417 PLEKHN1 TNFRSF4 MIR429 ANKRD65 RNF223 PERM1 ATAD3C CPSF3L TTLL10 MIR200B B3GALT6 ISG15 PUSL1 CPTP SSU72 LOC148413 ACAP3 MIR6808 MXRA8 MIB2 LOC284600 AGRN C1orf159 CDK11B HES4 MMP23B TTLL10-AS1 FAM132A LOC102724312 SCNN1D SDF4 LOC107985729 TNFRSF18 LOC100288175 CDK11A VWA1 ATAD3B LINC01342 MIR6727 ATAD3A NOC2L MIR200A LOC105378948 FAM87B CCNL2 MIR6726 MMP23A LOC107985728 SLC35E2 LINC00115 LINC01128 SLC35E2B NADK KLHL17 AURKAIP1 MRPL20 SAMD11 LOC100288069 FAM41C TMEM88B UBE2J2
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss DVL1 LOC100287934 FNDC10 OR4F5 TNFRSF4 MIR429 DDX11L1 PERM1 ATAD3C CPSF3L TTLL10 LOC105378947 MIR200B PRKCZ CPTP SSU72 ACAP3 MXRA8 LOC100506504 AGRN CDK11B MMP23B TTLL10-AS1 FAM132A LOC102724312 MTND1P23 SDF4 OR4F16 CDK11A LINC01342 ATAD3A NOC2L MIR200A GNB1 FAM87B CCNL2 MMP23A WASH7P SLC35E2 LINC00115 LINC01128 SLC35E2B AURKAIP1 FAM41C UBE2J2 MIR6723 CFAP74 LOC100134822 TAS1R3 TMEM240 LOC100130417 GABRD PLEKHN1 ANKRD65 MTND2P28 RNF223 OR4F29 B3GALT6 LOC102725121 ISG15 LOC105378592 PUSL1 LOC105378949 LOC148413 MIR1302-2 TMEM52 MIR6808 LOC107984841 MIB2 LOC284600 C1orf159 LOC729737 CALML6 MIR6859-1 FAM138A HES4 MIR6859-2 LOC105378589 SKI SCNN1D LOC107985729 LOC100132287 TNFRSF18 LOC100288175 VWA1 LOC105378591 ATAD3B MIR6727 LOC100129534 LOC105378948 MIR6726 FAAP20 LOC107985728 MORN1 NADK KLHL17 MRPL20 LOC101928626 SAMD11 LOC100288069 TMEM88B LOC100133331
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion DVL1 MMP23B TAS1R3 TTLL10-AS1 TMEM240 FNDC10 FAM132A LOC102724312 SCNN1D SDF4 LOC107985729 TNFRSF4 MIR429 TNFRSF18 ANKRD65 ATAD3C CPSF3L TTLL10 VWA1 MIR200B ATAD3B B3GALT6 LINC01342 MIR6727 ATAD3A MIR200A PUSL1 CCNL2 CPTP MIR6726 SSU72 LOC148413 ACAP3 MIR6808 MXRA8 AURKAIP1 MRPL20 MIB2 C1orf159 CDK11B TMEM88B UBE2J2
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain CCNL2 SSU72 LOC148413 TMEM240 LOC102724312 LOC107985729 ANKRD65 MRPL20 ATAD3C VWA1 ATAD3B ATAD3A TMEM88B
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss CFAP74 MMP23B TMEM240 FNDC10 LOC105378589 LOC102724312 LOC107985729 GABRD ANKRD65 ATAD3C CDK11A VWA1 LOC105378591 ATAD3B ATAD3A GNB1 PRKCZ LOC105378949 CCNL2 MMP23A SSU72 LOC148413 SLC35E2 TMEM52 SLC35E2B NADK MRPL20 MIB2 CDK11B TMEM88B CALML6

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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