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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1555278 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03368176_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss ATAD3B LOC102724312 SSU72 TMEM88B TMEM240 LOC107985729 ATAD3A ATAD3C VWA1 ANKRD65
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss TAS1R3 PUSL1 LOC107985728 SLC35E2 CCNL2 FAM87B ATAD3A NOC2L TMEM240 LOC284600 SAMD11 TNFRSF4 MRPL20 ANKRD65 LOC102724312 ISG15 CDK11A TTLL10 MMP23B MIR6808 MMP23A FNDC10 VWA1 FAM41C B3GALT6 SDF4 MIR6727 SSU72 LINC00115 PERM1 LOC148413 RNF223 NADK KLHL17 MIR200A AURKAIP1 AGRN LOC100130417 TNFRSF18 CPSF3L SCNN1D MXRA8 LINC01128 ATAD3B MIR6726 C1orf159 FAM132A TMEM88B PLEKHN1 MIR429 SLC35E2B LINC01342 MIR200B LOC105378948 LOC107985729 HES4 DVL1 TTLL10-AS1 MIB2 CDK11B LOC100288069 UBE2J2 CPTP ACAP3 ATAD3C LOC100287934 LOC100288175
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC107984841 CCNL2 LOC105378589 ATAD3A PRKCZ NOC2L LOC284600 SAMD11 TNFRSF4 CALML6 ANKRD65 ISG15 LOC729737 MIR6808 MMP23A FAM41C B3GALT6 SDF4 MIR6727 PERM1 RNF223 MTND2P28 OR4F5 AGRN LOC100130417 CPSF3L MIR6726 SKI C1orf159 TMEM88B DDX11L1 SLC35E2B LINC01342 LOC107985729 HES4 DVL1 TTLL10-AS1 MIB2 LOC100288069 UBE2J2 LOC105378949 MIR6723 LOC100287934 LOC100133331 TAS1R3 PUSL1 LOC107985728 SLC35E2 LOC105378947 MIR6859-2 FAM87B LOC100134822 TMEM240 FAAP20 LOC101928626 MRPL20 WASH7P MTND1P23 GNB1 LOC100129534 LOC102724312 CDK11A TTLL10 MMP23B LOC100132287 FNDC10 OR4F29 VWA1 FAM138A SSU72 LINC00115 LOC148413 NADK LOC100506504 KLHL17 MIR200A AURKAIP1 TNFRSF18 MIR1302-2 TMEM52 SCNN1D MXRA8 LINC01128 ATAD3B LOC105378591 FAM132A PLEKHN1 MIR429 LOC102725121 MIR6859-1 OR4F16 GABRD MIR200B LOC105378948 MORN1 LOC105378592 CDK11B CPTP ACAP3 CFAP74 ATAD3C LOC100288175
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TAS1R3 TNFRSF18 PUSL1 CPSF3L CCNL2 SCNN1D ATAD3A MXRA8 ATAD3B MIR6726 C1orf159 FAM132A TMEM88B TMEM240 MIR429 TNFRSF4 MRPL20 LINC01342 ANKRD65 LOC102724312 MIR200B TTLL10 MMP23B MIR6808 LOC107985729 FNDC10 DVL1 VWA1 TTLL10-AS1 B3GALT6 MIB2 CDK11B SDF4 MIR6727 SSU72 LOC148413 UBE2J2 CPTP ACAP3 ATAD3C MIR200A AURKAIP1
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain LOC102724312 CCNL2 LOC107985729 ATAD3A VWA1 ATAD3B SSU72 LOC148413 TMEM88B TMEM240 MRPL20 ATAD3C ANKRD65
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss SLC35E2 TMEM52 CCNL2 LOC105378589 ATAD3A PRKCZ ATAD3B LOC105378591 TMEM88B TMEM240 SLC35E2B CALML6 MRPL20 ANKRD65 GABRD GNB1 LOC102724312 CDK11A MMP23B LOC107985729 MMP23A FNDC10 VWA1 MIB2 CDK11B SSU72 LOC148413 LOC105378949 NADK CFAP74 ATAD3C

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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