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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1545852 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03370536_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK127149.1 1 636
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss SSU72 LOC107985729 TMEM240 ATAD3A TMEM88B ATAD3B VWA1 ATAD3C LOC102724312 ANKRD65
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC100287934 PERM1 MIR200A LOC284600 HES4 MXRA8 LINC00115 AURKAIP1 CDK11A UBE2J2 FAM132A ATAD3A MMP23A ACAP3 TAS1R3 MIR429 FAM87B KLHL17 TNFRSF18 PLEKHN1 LOC107985728 PUSL1 CPTP LINC01342 TMEM240 C1orf159 TTLL10-AS1 SDF4 NOC2L LOC100130417 TNFRSF4 LOC107985729 ATAD3C FAM41C MRPL20 LINC01128 LOC105378948 MMP23B LOC100288175 MIR200B TMEM88B MIR6726 LOC148413 MIB2 LOC102724312 ANKRD65 RNF223 SSU72 ATAD3B VWA1 TTLL10 DVL1 CPSF3L SLC35E2 LOC100288069 MIR6808 SLC35E2B AGRN ISG15 CDK11B SCNN1D FNDC10 CCNL2 MIR6727 SAMD11 B3GALT6 NADK
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100287934 FAAP20 PERM1 MIR200A GNB1 GABRD MXRA8 MMP23A ACAP3 TAS1R3 OR4F16 FAM87B LOC107985728 MIR6723 CPTP LINC01342 TMEM240 C1orf159 LOC100130417 LOC105378591 LOC107985729 DDX11L1 ATAD3C LOC101928626 FAM41C MRPL20 MIR200B MIR1302-2 TMEM88B MIR6726 LOC148413 MIB2 RNF223 SSU72 TMEM52 ATAD3B VWA1 CFAP74 SKI DVL1 MIR6859-1 SLC35E2B ISG15 CDK11B OR4F5 LOC102725121 MTND1P23 CALML6 LOC284600 LOC100129534 HES4 MORN1 LINC00115 AURKAIP1 CDK11A UBE2J2 FAM132A LOC105378947 ATAD3A MIR429 MIR6859-2 LOC105378949 KLHL17 TNFRSF18 PLEKHN1 LOC105378589 PUSL1 TTLL10-AS1 SDF4 NOC2L TNFRSF4 LOC100134822 LOC107984841 LINC01128 LOC100132287 LOC105378948 MMP23B LOC100288175 WASH7P PRKCZ LOC102724312 ANKRD65 FAM138A OR4F29 LOC105378592 TTLL10 CPSF3L SLC35E2 LOC100288069 MIR6808 AGRN LOC100506504 LOC729737 LOC100133331 SCNN1D FNDC10 CCNL2 MIR6727 MTND2P28 SAMD11 B3GALT6 NADK
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MRPL20 MMP23B MIR200B MIR200A TMEM88B MIR6726 LOC148413 MIB2 LOC102724312 MXRA8 ANKRD65 AURKAIP1 UBE2J2 FAM132A SSU72 ATAD3A ACAP3 TAS1R3 MIR429 ATAD3B VWA1 TTLL10 TNFRSF18 DVL1 PUSL1 CPSF3L CPTP LINC01342 TMEM240 C1orf159 MIR6808 TTLL10-AS1 CDK11B SDF4 SCNN1D FNDC10 TNFRSF4 CCNL2 LOC107985729 MIR6727 ATAD3C B3GALT6
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain MRPL20 TMEM240 TMEM88B LOC148413 LOC102724312 ANKRD65 SSU72 CCNL2 LOC107985729 ATAD3A ATAD3B VWA1 ATAD3C
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss MRPL20 CALML6 MMP23B GNB1 GABRD TMEM88B LOC148413 MIB2 PRKCZ LOC102724312 ANKRD65 CDK11A SSU72 TMEM52 ATAD3A MMP23A ATAD3B VWA1 CFAP74 LOC105378949 LOC105378589 SLC35E2 TMEM240 SLC35E2B CDK11B FNDC10 LOC105378591 CCNL2 LOC107985729 ATAD3C NADK

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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