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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1545852 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03370536_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK127149.1 1 636
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss ATAD3A SSU72 TMEM240 VWA1 ANKRD65 TMEM88B LOC102724312 LOC107985729 ATAD3C ATAD3B
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss NOC2L HES4 DVL1 PUSL1 TNFRSF4 ATAD3A MIR6808 LINC01342 NADK LOC107985729 TNFRSF18 LOC100287934 MMP23A MIR200A LOC102724312 AGRN ATAD3C MIR6727 C1orf159 MMP23B MIB2 CDK11B CPSF3L FNDC10 LOC105378948 LOC100288175 LOC100130417 RNF223 SAMD11 FAM41C TTLL10 SLC35E2 CPTP LINC01128 TTLL10-AS1 ACAP3 ATAD3B SLC35E2B TMEM240 VWA1 MIR429 ANKRD65 B3GALT6 SDF4 PLEKHN1 MIR200B SCNN1D MXRA8 FAM132A CDK11A CCNL2 ISG15 LOC107985728 LINC00115 LOC100288069 TMEM88B MIR6726 FAM87B AURKAIP1 LOC284600 TAS1R3 PERM1 SSU72 KLHL17 MRPL20 UBE2J2 LOC148413
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss PUSL1 LOC105378589 TNFRSF4 LOC105378947 ATAD3A LOC100133331 LINC01342 LOC107984841 LOC100287934 MIR200A LOC729737 MIR6723 LOC102724312 LOC105378949 MIR1302-2 TMEM52 LOC102725121 CPSF3L LOC105378948 LOC100288175 WASH7P RNF223 SAMD11 MTND1P23 TTLL10 LOC100132287 LOC100506504 LINC01128 ACAP3 ATAD3B TMEM240 VWA1 MIR429 ANKRD65 MXRA8 MTND2P28 LOC100288069 TMEM88B MIR6726 SKI FAM87B PERM1 NOC2L HES4 DVL1 MIR6808 NADK CALML6 DDX11L1 LOC107985729 OR4F5 TNFRSF18 MMP23A AGRN ATAD3C MIR6727 CFAP74 LOC101928626 C1orf159 MMP23B LOC100134822 MIB2 CDK11B FNDC10 FAM138A LOC105378592 LOC100130417 GNB1 FAM41C SLC35E2 CPTP FAAP20 TTLL10-AS1 OR4F16 PRKCZ MORN1 SLC35E2B B3GALT6 MIR6859-2 SDF4 PLEKHN1 MIR200B SCNN1D FAM132A CDK11A CCNL2 LOC105378591 ISG15 LOC107985728 LINC00115 GABRD LOC100129534 AURKAIP1 LOC284600 TAS1R3 SSU72 KLHL17 MRPL20 UBE2J2 OR4F29 MIR6859-1 LOC148413
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TTLL10 DVL1 PUSL1 CPTP TNFRSF4 TTLL10-AS1 ACAP3 ATAD3B ATAD3A TMEM240 VWA1 MIR429 ANKRD65 MIR6808 B3GALT6 SDF4 LINC01342 MIR200B LOC107985729 SCNN1D MXRA8 FAM132A TNFRSF18 CCNL2 MIR200A TMEM88B MIR6726 LOC102724312 AURKAIP1 ATAD3C MIR6727 C1orf159 MMP23B TAS1R3 MIB2 CDK11B SSU72 CPSF3L FNDC10 MRPL20 UBE2J2 LOC148413
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain CCNL2 TMEM88B LOC102724312 ATAD3C ATAD3B ATAD3A SSU72 TMEM240 VWA1 ANKRD65 MRPL20 LOC148413 LOC107985729
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss SLC35E2 LOC105378589 ATAD3B PRKCZ ATAD3A SLC35E2B TMEM240 VWA1 ANKRD65 NADK CALML6 LOC107985729 CDK11A CCNL2 LOC105378591 MMP23A GABRD TMEM88B LOC102724312 LOC105378949 ATAD3C CFAP74 MMP23B TMEM52 MIB2 CDK11B SSU72 FNDC10 MRPL20 LOC148413 GNB1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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