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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1558853 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03370726_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss TMEM240 SSU72 ATAD3C ANKRD65 VWA1 ATAD3A LOC102724312 TMEM88B ATAD3B LOC107985729
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MRPL20 CDK11A ATAD3A KLHL17 ISG15 FAM41C NADK SSU72 UBE2J2 LOC100130417 VWA1 FNDC10 MIR200A SLC35E2 TTLL10-AS1 LOC105378948 ANKRD65 SAMD11 FAM132A RNF223 AURKAIP1 LOC107985728 LOC100288069 HES4 MIR200B LOC284600 MIB2 NOC2L MXRA8 SLC35E2B LOC100287934 LINC00115 MIR6808 TNFRSF4 ATAD3B CPSF3L FAM87B TAS1R3 MMP23A B3GALT6 AGRN PERM1 CCNL2 ATAD3C TTLL10 LOC102724312 TMEM88B PUSL1 CPTP MIR6727 PLEKHN1 MMP23B SDF4 MIR429 DVL1 SCNN1D MIR6726 LOC107985729 C1orf159 TMEM240 LOC148413 LINC01128 TNFRSF18 LINC01342 CDK11B LOC100288175 ACAP3
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MRPL20 ATAD3A ISG15 TMEM52 LOC105378949 FAM41C NADK SSU72 UBE2J2 VWA1 MIR6859-1 MIR6859-2 MIR6723 LOC101928626 SLC35E2 LOC105378948 SAMD11 RNF223 AURKAIP1 LOC107985728 MORN1 HES4 MIR200B LOC284600 NOC2L MXRA8 LOC105378591 LOC100287934 MIR6808 ATAD3B CPSF3L PRKCZ TAS1R3 MMP23A AGRN LOC100134822 CCNL2 ATAD3C GABRD TTLL10 LOC102724312 TMEM88B PUSL1 OR4F16 OR4F29 PLEKHN1 DVL1 MIR6726 C1orf159 LINC01342 OR4F5 LOC100129534 MTND1P23 LOC100288175 ACAP3 LOC102725121 GNB1 CDK11A KLHL17 MTND2P28 LOC107984841 LOC100130417 FNDC10 LOC100133331 MIR200A TTLL10-AS1 ANKRD65 LOC105378592 FAM132A LOC100132287 CFAP74 FAM138A LOC100288069 LOC100506504 MIB2 SKI SLC35E2B LINC00115 TNFRSF4 FAM87B FAAP20 B3GALT6 PERM1 CALML6 LOC105378589 CPTP MIR6727 MMP23B SDF4 MIR429 SCNN1D DDX11L1 LOC107985729 WASH7P LOC729737 TMEM240 LOC148413 LINC01128 LOC105378947 TNFRSF18 CDK11B MIR1302-2
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MXRA8 MRPL20 ATAD3A MIR6808 TNFRSF4 ATAD3B CPSF3L TAS1R3 B3GALT6 SSU72 CCNL2 UBE2J2 ATAD3C VWA1 FNDC10 TTLL10 LOC102724312 TMEM88B PUSL1 MIR200A CPTP TTLL10-AS1 MIR6727 ANKRD65 MMP23B SDF4 MIR429 DVL1 SCNN1D FAM132A MIR6726 LOC107985729 C1orf159 AURKAIP1 TMEM240 LOC148413 TNFRSF18 MIR200B LINC01342 CDK11B MIB2 ACAP3
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain MRPL20 ANKRD65 ATAD3A ATAD3B LOC107985729 TMEM240 LOC148413 SSU72 CCNL2 ATAD3C VWA1 LOC102724312 TMEM88B
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss SLC35E2B GNB1 LOC105378591 MRPL20 CDK11A ATAD3A TMEM52 ATAD3B LOC105378949 PRKCZ MMP23A NADK SSU72 CCNL2 ATAD3C VWA1 GABRD FNDC10 LOC102724312 CALML6 TMEM88B LOC105378589 SLC35E2 ANKRD65 MMP23B LOC107985729 CFAP74 TMEM240 LOC148413 CDK11B MIB2

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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