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See other TNFRSF4 CNV Assays ›
Gene Symbol
TNFRSF4
Assay Reference Genome
Location

Chr.1:1213157 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03375719_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 7293

Gene Name:

 TNF receptor superfamily member 4

Gene Aliases:

 ACT35, CD134, IMD16, OX40, TXGP1L

Location:

 Chr.1:1211326-1216812 on Build GRCh38

Assay Gene Location:

 Within Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TNFRSF4 NM_003327.3 NP_003318.1
XM_011542074.2 1 600 XP_011540376.1
XM_011542075.2 XP_011540377.1
XM_011542076.2 1 600 XP_011540378.1
XM_017002231.1 XP_016857720.1
XM_017002232.1 XP_016857721.1
BC105070.1 AAI05071.1
BC105072.1 AAI05073.1
S76792.1 AAB33944.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100129534 LOC101928626 SDF4 LOC105378591 TTLL10-AS1 TAS1R3 AURKAIP1 KLHL17 PLEKHN1 ISG15 SAMD11 LOC100130417 LINC01128 LOC105378592 LOC107985729 LOC729737 MMP23A MTND2P28 LINC01342 HES4 LOC100132287 LOC105378947 MIR200B SSU72 FAM87B LINC00115 OR4F29 MIR6808 UBE2J2 MIR6727 LOC102724312 LOC107984841 VWA1 AGRN CDK11A PUSL1 MIR6726 CDK11B FAM41C SKI TMEM240 MIR6859-1 OR4F16 C1orf159 LOC100134822 CCNL2 ATAD3C CALML6 LOC105378589 MTND1P23 MRPL20 LOC148413 MIR200A LOC105378948 DVL1 MIR429 LOC100133331 DDX11L1 LOC100288175 FAM132A LOC284600 SLC35E2B MMP23B TMEM88B PERM1 LOC105378949 TNFRSF18 RNF223 SCNN1D LOC100287934 FAAP20 CFAP74 NOC2L MIB2 TTLL10 TMEM52 ANKRD65 WASH7P TNFRSF4 OR4F5 CPTP LOC100506504 FNDC10 NADK ATAD3A LOC100288069 LOC102725121 SLC35E2 GNB1 MIR6859-2 ACAP3 PRKCZ MIR6723 CPSF3L ATAD3B B3GALT6 MORN1 FAM138A LOC107985728 MXRA8 MIR1302-2 GABRD
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain TNFRSF4 LINC01342 TNFRSF18 RNF223 UBE2J2 SDF4 MIR200B MIR200A LOC105378948 SCNN1D MIR429 B3GALT6 TTLL10-AS1 FAM132A C1orf159 TTLL10
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss ACAP3 TNFRSF4 LINC01342 TNFRSF18 RNF223 UBE2J2 SDF4 MIR200B MIR200A SCNN1D MIR429 B3GALT6 TTLL10-AS1 FAM132A C1orf159 TTLL10 MIR6726
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss B3GALT6 TNFRSF4 TTLL10-AS1 TNFRSF18 SDF4 TTLL10
nsv544963 Chr.1:1206945 - 1214281 on Build GRCh38 Loss TNFRSF4 TNFRSF18
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain TNFRSF4 SDF4 MIR200A LOC105378948 MIR429 LOC100288175 TTLL10-AS1 KLHL17 PLEKHN1 AGRN ISG15 SAMD11 LOC100130417 LOC284600 FAM41C LINC01342 HES4 PERM1 TNFRSF18 RNF223 MIR200B LOC107985728 NOC2L C1orf159 TTLL10
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TNFRSF4 CPTP UBE2J2 SDF4 MIR200A MIR6727 LOC105378948 MIR429 LOC100288175 TTLL10-AS1 FAM132A TAS1R3 AGRN PUSL1 MIR6726 ACAP3 LINC01342 TNFRSF18 RNF223 MIR200B CPSF3L SCNN1D B3GALT6 C1orf159 TTLL10
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MRPL20 LOC148413 SDF4 MIR200A LOC105378948 DVL1 MIR429 LOC100288175 TTLL10-AS1 FAM132A TAS1R3 AURKAIP1 KLHL17 PLEKHN1 ISG15 SAMD11 LOC100130417 LOC284600 LINC01128 SLC35E2B LOC107985729 MMP23B MMP23A LINC01342 TMEM88B HES4 PERM1 TNFRSF18 RNF223 MIR200B SSU72 FAM87B SCNN1D LOC100287934 NOC2L MIB2 LINC00115 TTLL10 MIR6808 ANKRD65 TNFRSF4 CPTP UBE2J2 FNDC10 MIR6727 NADK LOC102724312 ATAD3A LOC100288069 SLC35E2 VWA1 AGRN CDK11A PUSL1 MIR6726 ACAP3 CDK11B FAM41C TMEM240 CPSF3L ATAD3B B3GALT6 LOC107985728 MXRA8 C1orf159 CCNL2 ATAD3C
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss TNFRSF4 UBE2J2 SDF4 MIR200A LOC105378948 MIR429 LOC100288175 TTLL10-AS1 FAM132A KLHL17 PLEKHN1 AGRN ISG15 SAMD11 LOC100130417 LOC284600 LINC01128 FAM41C LINC01342 HES4 PERM1 TNFRSF18 RNF223 MIR200B FAM87B B3GALT6 LOC107985728 NOC2L C1orf159 LINC00115 TTLL10
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MIR6808 ANKRD65 TNFRSF4 CPTP MRPL20 LOC148413 UBE2J2 FNDC10 SDF4 MIR200A MIR6727 DVL1 MIR429 LOC102724312 ATAD3A TTLL10-AS1 FAM132A TAS1R3 AURKAIP1 VWA1 PUSL1 MIR6726 ACAP3 LOC107985729 CDK11B MMP23B LINC01342 TMEM240 TMEM88B TNFRSF18 MIR200B CPSF3L ATAD3B SSU72 SCNN1D B3GALT6 MXRA8 C1orf159 MIB2 CCNL2 ATAD3C TTLL10
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MIR6808 ANKRD65 TNFRSF4 CPTP MRPL20 LOC148413 UBE2J2 SDF4 MIR200A MIR6727 LOC105378948 DVL1 MIR429 LOC100288175 TTLL10-AS1 FAM132A TAS1R3 AURKAIP1 KLHL17 PLEKHN1 AGRN ISG15 SAMD11 LOC100130417 LOC284600 PUSL1 MIR6726 ACAP3 LINC01342 TMEM88B HES4 PERM1 TNFRSF18 RNF223 MIR200B CPSF3L SCNN1D B3GALT6 LOC107985728 NOC2L MXRA8 C1orf159 CCNL2 TTLL10
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion TNFRSF4 LINC01342 HES4 PERM1 TNFRSF18 RNF223 SDF4 MIR200B MIR200A LOC105378948 MIR429 LOC100288175 TTLL10-AS1 NOC2L C1orf159 KLHL17 PLEKHN1 AGRN ISG15 SAMD11 TTLL10
dgv24n54 Chr.1:1205055 - 1213515 on Build GRCh38 Loss TNFRSF4 TNFRSF18
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain ACAP3 TNFRSF4 TNFRSF18 UBE2J2 SDF4 MIR200B CPSF3L MIR200A MIR6727 SCNN1D MIR429 B3GALT6 TTLL10-AS1 FAM132A TTLL10 PUSL1 MIR6726

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