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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1562123 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03377000_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK129493.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss SSU72 TMEM88B TMEM240 ATAD3C LOC107985729 VWA1 ANKRD65 ATAD3B ATAD3A LOC102724312
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss DVL1 PUSL1 MIR200B MXRA8 B3GALT6 ACAP3 CDK11A NOC2L TMEM88B LOC100287934 CCNL2 MMP23A LINC01128 MIR6808 TTLL10-AS1 MMP23B ANKRD65 LOC102724312 UBE2J2 FAM132A ATAD3C CPTP SCNN1D ATAD3B CDK11B LOC105378948 TAS1R3 TTLL10 ISG15 LOC107985728 FAM87B MIR6726 SAMD11 CPSF3L FNDC10 PLEKHN1 VWA1 PERM1 LOC148413 AGRN LOC284600 LINC00115 RNF223 C1orf159 KLHL17 LINC01342 TMEM240 NADK LOC100288069 SLC35E2B MIR200A AURKAIP1 SLC35E2 TNFRSF4 MIR429 ATAD3A MIB2 HES4 LOC100130417 SDF4 SSU72 LOC100288175 MRPL20 FAM41C LOC107985729 TNFRSF18 MIR6727
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss DVL1 PUSL1 MIR200B MXRA8 ACAP3 CDK11A LOC102725121 NOC2L TMEM88B MIR6723 FAM132A OR4F29 ATAD3C CPTP SCNN1D OR4F5 LOC105378592 TTLL10 LOC100506504 SKI LOC105378949 OR4F16 FAM87B LOC729737 VWA1 MTND2P28 AGRN LOC105378591 LOC284600 LINC00115 RNF223 KLHL17 CFAP74 LOC100288069 MIR429 ATAD3A LOC100132287 MIB2 SDF4 SSU72 LOC100288175 LOC100129534 LOC107985729 LOC100133331 PRKCZ MIR6727 LOC107984841 TMEM52 B3GALT6 MIR6859-1 LOC100287934 CCNL2 MMP23A GNB1 LINC01128 MIR6808 TTLL10-AS1 MMP23B ANKRD65 LOC102724312 UBE2J2 FAM138A ATAD3B CDK11B LOC105378948 LOC105378589 TAS1R3 MTND1P23 MIR6859-2 ISG15 LOC107985728 CALML6 MIR6726 SAMD11 MORN1 MIR1302-2 CPSF3L LOC100134822 FNDC10 PLEKHN1 PERM1 LOC148413 GABRD FAAP20 C1orf159 LINC01342 TMEM240 LOC101928626 NADK SLC35E2B MIR200A AURKAIP1 SLC35E2 TNFRSF4 HES4 LOC100130417 MRPL20 FAM41C WASH7P DDX11L1 TNFRSF18 LOC105378947
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion DVL1 CPSF3L PUSL1 FNDC10 MIR200B VWA1 MXRA8 LOC148413 B3GALT6 ACAP3 TMEM88B CCNL2 MIR6808 TTLL10-AS1 MMP23B ANKRD65 LOC102724312 UBE2J2 C1orf159 LINC01342 FAM132A TMEM240 ATAD3C CPTP SCNN1D MIR200A AURKAIP1 TNFRSF4 MIR429 ATAD3B CDK11B ATAD3A MIB2 TAS1R3 SDF4 TTLL10 SSU72 MRPL20 LOC107985729 TNFRSF18 MIR6726 MIR6727
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain TMEM240 ATAD3C VWA1 ATAD3B ATAD3A LOC148413 SSU72 TMEM88B MRPL20 CCNL2 LOC107985729 ANKRD65 LOC102724312
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss FNDC10 VWA1 TMEM52 LOC148413 CDK11A TMEM88B GABRD CCNL2 MMP23A GNB1 LOC105378591 MMP23B ANKRD65 LOC102724312 TMEM240 ATAD3C NADK CFAP74 SLC35E2B SLC35E2 ATAD3B CDK11B ATAD3A LOC105378589 MIB2 SSU72 MRPL20 LOC107985729 LOC105378949 CALML6 PRKCZ

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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