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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1562123 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03377000_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK129493.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss VWA1 SSU72 ATAD3A ATAD3C LOC107985729 TMEM240 ATAD3B LOC102724312 ANKRD65 TMEM88B
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MMP23B NADK CDK11B NOC2L AGRN SAMD11 LOC107985729 LOC100130417 SLC35E2 MRPL20 MXRA8 C1orf159 TTLL10 KLHL17 B3GALT6 ATAD3A TNFRSF18 LOC107985728 UBE2J2 MIR6726 MIR6727 CPTP SSU72 FAM41C TAS1R3 ATAD3B RNF223 MIB2 SLC35E2B PLEKHN1 ISG15 HES4 VWA1 AURKAIP1 LOC105378948 LINC01342 CPSF3L TNFRSF4 FAM87B MIR200A SDF4 CDK11A TMEM240 SCNN1D ACAP3 LOC148413 ANKRD65 LOC100288069 DVL1 PUSL1 LINC01128 LINC00115 MIR6808 MIR429 FNDC10 LOC100287934 CCNL2 TMEM88B TTLL10-AS1 FAM132A PERM1 MMP23A LOC100288175 ATAD3C LOC284600 LOC102724312 MIR200B
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MMP23B NOC2L AGRN SAMD11 LOC100130417 SLC35E2 KLHL17 B3GALT6 LOC107985728 MIR6726 MIR6723 CPTP SSU72 LOC101928626 TAS1R3 ATAD3B WASH7P RNF223 PLEKHN1 OR4F5 ISG15 HES4 CPSF3L TNFRSF4 FAM138A LOC105378947 SDF4 CDK11A TMEM240 CALML6 ACAP3 LOC100132287 LOC100288069 DVL1 LOC729737 PUSL1 LINC01128 MIR6859-1 LINC00115 MIR6808 MORN1 FNDC10 LOC100287934 LOC100133331 LOC105378589 SKI CCNL2 TMEM88B TTLL10-AS1 PERM1 LOC100288175 ATAD3C GABRD LOC284600 NADK CDK11B MTND1P23 LOC107985729 LOC100506504 MRPL20 GNB1 LOC105378591 MXRA8 DDX11L1 C1orf159 TTLL10 TMEM52 ATAD3A MIR1302-2 TNFRSF18 UBE2J2 MIR6727 OR4F29 FAM41C MIR6859-2 LOC107984841 MIB2 SLC35E2B LOC105378949 VWA1 AURKAIP1 LOC105378948 MTND2P28 LINC01342 FAM87B FAAP20 MIR200A SCNN1D LOC148413 ANKRD65 OR4F16 CFAP74 MIR429 LOC100129534 LOC100134822 LOC102725121 FAM132A LOC105378592 MMP23A PRKCZ LOC102724312 MIR200B
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MMP23B CDK11B LOC107985729 TMEM240 SCNN1D MRPL20 ACAP3 LOC148413 ANKRD65 MXRA8 C1orf159 TTLL10 DVL1 B3GALT6 ATAD3A PUSL1 TNFRSF18 UBE2J2 MIR6808 MIR429 MIR6726 FNDC10 MIR6727 CPTP SSU72 TAS1R3 ATAD3B MIB2 CCNL2 TMEM88B TTLL10-AS1 FAM132A VWA1 AURKAIP1 LINC01342 ATAD3C CPSF3L TNFRSF4 LOC102724312 MIR200A MIR200B SDF4
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain SSU72 LOC107985729 TMEM240 ATAD3B MRPL20 LOC148413 CCNL2 ANKRD65 TMEM88B VWA1 ATAD3A ATAD3C LOC102724312
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss MMP23B CDK11A NADK CDK11B LOC107985729 TMEM240 CALML6 SLC35E2 MRPL20 LOC148413 GNB1 ANKRD65 LOC105378591 TMEM52 ATAD3A CFAP74 FNDC10 SSU72 LOC105378589 ATAD3B MIB2 CCNL2 SLC35E2B LOC105378949 TMEM88B VWA1 MMP23A ATAD3C GABRD PRKCZ LOC102724312

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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