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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1562824 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03377542_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AF305818.1 1 1701 AAK55521.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK023110.1 2 2200 BAB14410.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss ATAD3B TMEM240 ATAD3A VWA1 ATAD3C LOC102724312 TMEM88B LOC107985729 SSU72 ANKRD65
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss SLC35E2 PLEKHN1 CPTP CDK11A MXRA8 C1orf159 AURKAIP1 KLHL17 FNDC10 FAM87B TTLL10-AS1 MIB2 LOC107985728 ISG15 PERM1 LOC107985729 TTLL10 MIR200B TMEM240 MIR200A SCNN1D MIR429 CDK11B SAMD11 UBE2J2 CPSF3L LINC01342 PUSL1 MIR6808 TNFRSF18 LINC01128 MRPL20 NADK FAM41C LOC100288175 DVL1 RNF223 MMP23A MIR6727 SDF4 CCNL2 ATAD3C MIR6726 LOC148413 MMP23B NOC2L ATAD3B FAM132A LOC100130417 LOC100288069 LOC100287934 TAS1R3 ACAP3 TNFRSF4 B3GALT6 LINC00115 HES4 SLC35E2B ATAD3A VWA1 LOC284600 LOC102724312 TMEM88B SSU72 AGRN LOC105378948 ANKRD65
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss OR4F29 MORN1 SLC35E2 CDK11A MXRA8 C1orf159 AURKAIP1 TMEM52 LOC100134822 FAM87B LOC107985728 ISG15 PERM1 LOC107985729 MIR6723 GABRD MIR200A SCNN1D CDK11B LOC100506504 CPSF3L FAAP20 PUSL1 MIR6808 OR4F5 NADK FAM41C LOC100288175 DDX11L1 RNF223 MTND2P28 LOC102725121 FAM138A LOC105378592 LOC148413 ATAD3B LOC100288069 B3GALT6 LINC00115 HES4 LOC105378591 VWA1 LOC284600 CALML6 LOC102724312 ANKRD65 PLEKHN1 CPTP KLHL17 FNDC10 LOC105378947 TTLL10-AS1 MIB2 LOC100133331 LOC729737 TTLL10 MIR200B LOC105378589 TMEM240 MTND1P23 GNB1 LOC105378949 MIR429 SAMD11 UBE2J2 LINC01342 OR4F16 TNFRSF18 LINC01128 MRPL20 LOC100129534 DVL1 PRKCZ MMP23A MIR6727 SKI SDF4 CCNL2 LOC100132287 ATAD3C MIR6859-2 WASH7P MIR6726 LOC101928626 MMP23B NOC2L LOC107984841 FAM132A LOC100130417 LOC100287934 TAS1R3 ACAP3 TNFRSF4 SLC35E2B ATAD3A CFAP74 MIR1302-2 TMEM88B MIR6859-1 SSU72 AGRN LOC105378948
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion CPTP MXRA8 C1orf159 AURKAIP1 FNDC10 DVL1 MIR6727 SDF4 CCNL2 TTLL10-AS1 MIB2 ATAD3C MIR6726 LOC107985729 LOC148413 MMP23B ATAD3B TTLL10 FAM132A MIR200B TAS1R3 ACAP3 TNFRSF4 TMEM240 B3GALT6 MIR200A SCNN1D MIR429 CDK11B UBE2J2 ATAD3A VWA1 CPSF3L LINC01342 PUSL1 MIR6808 TNFRSF18 LOC102724312 MRPL20 TMEM88B SSU72 ANKRD65
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain ATAD3B TMEM240 ATAD3A CCNL2 VWA1 ATAD3C LOC102724312 MRPL20 TMEM88B LOC107985729 LOC148413 SSU72 ANKRD65
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss NADK SLC35E2 CDK11A FNDC10 TMEM52 PRKCZ MMP23A CCNL2 MIB2 ATAD3C LOC107985729 LOC148413 MMP23B ATAD3B LOC105378589 TMEM240 GABRD GNB1 LOC105378949 CDK11B LOC105378591 SLC35E2B ATAD3A VWA1 CALML6 CFAP74 LOC102724312 MRPL20 TMEM88B SSU72 ANKRD65

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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