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See other SDF4 CNV Assays ›
Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1225106 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03378628_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TTLL10-AS1 MIR429 RNF223 SDF4 TNFRSF18 C1orf159 MIR6727 ACAP3 LINC01342 MIR200B LOC105378948 TTLL10 TNFRSF4 FAM132A PUSL1 B3GALT6 MIR200A UBE2J2 CPSF3L CPTP MIR6726 SCNN1D TAS1R3 AGRN LOC100288175
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC107985729 AURKAIP1 CDK11A TNFRSF18 PERM1 LINC01342 MIR6808 FNDC10 LOC100288069 ISG15 TTLL10 MIB2 FAM132A TMEM240 KLHL17 PUSL1 LOC102724312 NADK UBE2J2 CPTP CDK11B MIR6726 CCNL2 TMEM88B LOC100287934 MMP23A AGRN LOC100288175 MRPL20 TTLL10-AS1 MIR429 LINC00115 SAMD11 HES4 LOC148413 SLC35E2 NOC2L RNF223 LOC100130417 LOC107985728 FAM41C SDF4 C1orf159 ANKRD65 LINC01128 MIR6727 LOC284600 ACAP3 VWA1 ATAD3C MIR200B LOC105378948 TNFRSF4 ATAD3B ATAD3A B3GALT6 FAM87B MIR200A MXRA8 MMP23B CPSF3L SCNN1D TAS1R3 PLEKHN1 DVL1 SSU72 SLC35E2B
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100133331 AURKAIP1 CDK11A TNFRSF18 LOC105378949 FAM138A PERM1 LOC105378591 LINC01342 GABRD TTLL10 CFAP74 MORN1 FAM132A TMEM240 KLHL17 PUSL1 NADK MIR6723 MTND2P28 LOC100129534 CDK11B MIR6726 TMEM88B LOC100287934 LOC107984841 AGRN LOC100288175 MRPL20 MIR429 TMEM52 CALML6 HES4 LOC148413 SLC35E2 RNF223 FAM41C MIR1302-2 SDF4 WASH7P LOC100134822 C1orf159 ANKRD65 LINC01128 MIR6727 LOC284600 ACAP3 ATAD3C MIR200B LOC102725121 LOC105378589 LOC105378948 LOC729737 TNFRSF4 OR4F29 PRKCZ ATAD3B FAAP20 ATAD3A FAM87B MIR200A MIR6859-1 MXRA8 MMP23B LOC105378947 TAS1R3 DVL1 SLC35E2B GNB1 LOC107985729 DDX11L1 MIR6808 FNDC10 LOC100288069 ISG15 MIB2 LOC102724312 UBE2J2 CPTP CCNL2 MIR6859-2 MMP23A OR4F5 TTLL10-AS1 LINC00115 SAMD11 MTND1P23 LOC105378592 OR4F16 NOC2L LOC100130417 LOC107985728 VWA1 SKI LOC100506504 B3GALT6 LOC101928626 CPSF3L LOC100132287 SCNN1D PLEKHN1 SSU72
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss MIR6726 ACAP3 SCNN1D B3GALT6 UBE2J2 SDF4 FAM132A
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss TTLL10-AS1 MIR429 LINC00115 SAMD11 HES4 NOC2L RNF223 LOC100130417 LOC107985728 FAM41C SDF4 TNFRSF18 C1orf159 LINC01128 LOC284600 PERM1 LINC01342 MIR200B LOC105378948 ISG15 TTLL10 TNFRSF4 FAM132A KLHL17 B3GALT6 FAM87B MIR200A UBE2J2 PLEKHN1 AGRN LOC100288175
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MRPL20 TTLL10-AS1 MIR429 LOC148413 LOC107985729 AURKAIP1 SDF4 TNFRSF18 C1orf159 ANKRD65 MIR6727 ACAP3 LINC01342 VWA1 ATAD3C MIR6808 MIR200B FNDC10 TTLL10 MIB2 TNFRSF4 FAM132A TMEM240 ATAD3B PUSL1 ATAD3A B3GALT6 LOC102724312 MIR200A UBE2J2 MXRA8 MMP23B CPSF3L CPTP CDK11B MIR6726 CCNL2 TMEM88B SCNN1D TAS1R3 DVL1 SSU72
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MRPL20 TTLL10-AS1 MIR429 SAMD11 HES4 LOC148413 NOC2L RNF223 LOC100130417 LOC107985728 AURKAIP1 SDF4 TNFRSF18 C1orf159 ANKRD65 MIR6727 LOC284600 PERM1 ACAP3 LINC01342 MIR6808 MIR200B LOC105378948 ISG15 TTLL10 TNFRSF4 FAM132A KLHL17 PUSL1 B3GALT6 MIR200A UBE2J2 MXRA8 CPSF3L CPTP MIR6726 CCNL2 TMEM88B SCNN1D TAS1R3 PLEKHN1 AGRN DVL1 LOC100288175
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain TTLL10-AS1 MIR429 B3GALT6 MIR200A UBE2J2 RNF223 SDF4 TNFRSF18 C1orf159 SCNN1D LINC01342 MIR200B LOC105378948 TTLL10 TNFRSF4 FAM132A
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss TTLL10-AS1 MIR429 B3GALT6 MIR200A UBE2J2 RNF223 SDF4 TNFRSF18 C1orf159 MIR6726 ACAP3 SCNN1D LINC01342 MIR200B TTLL10 TNFRSF4 FAM132A
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain TTLL10-AS1 MIR429 PUSL1 B3GALT6 MIR200A UBE2J2 SDF4 CPSF3L TNFRSF18 MIR6726 MIR6727 ACAP3 SCNN1D MIR200B TTLL10 TNFRSF4 FAM132A
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10-AS1 TNFRSF18 B3GALT6 TTLL10 TNFRSF4 SDF4

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