Hs03379894_cn

• Gene Symbol: FAAP20
• Assay Reference Genome Location: Chr.1:2210003 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 199990
• Gene Name: Fanconi anemia core complex associated protein 20
• Gene Aliases: C1orf86, FP7162
• Location: Chr.1:2184460-2212720 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAAP20	NM_001282670.1			NP_001269599.1
	AK126870.1			BAC86730.1

Target Gene Details

• Entrez Gene ID: 105378592
• Gene Name: uncharacterized LOC105378592
• Gene Aliases: -
• Location: Chr.1:2207597-2215193 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105378592	XM_017003076.1			XP_016858565.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	LOC100288175 GABRD DVL1 LOC105378947 CDK11A SKI AGRN MIR200B LOC102725121 MXRA8 PRKCZ LOC284600 PUSL1 ATAD3C MTND2P28 TMEM52 LOC100129534 C1orf159 LOC100130417 MIR6859-1 TTLL10-AS1 SLC35E2B MRPL20 CALML6 LOC107985729 LOC100506504 KLHL17 LOC105378591 FNDC10 SDF4 MIR200A TMEM240 LOC100132287 MORN1 CPTP OR4F16 LOC100134822 CCNL2 ACAP3 MIB2 LOC105378948 SCNN1D CDK11B AURKAIP1 RNF223 CPSF3L MIR6859-2 MMP23B GNB1 PERM1 B3GALT6 MIR429 NOC2L SSU72 MTND1P23 MMP23A LINC01342 FAM132A ATAD3B ANKRD65 LOC100288069 LOC107984841 PLEKHN1 VWA1 LOC107985728 MIR1302-2 NADK UBE2J2 LOC105378949 FAM41C MIR6723 TTLL10 FAM87B LOC102724312 TNFRSF18 HES4 DDX11L1 MIR6808 LOC105378589 ATAD3A FAAP20 LOC148413 SAMD11 MIR6727 LINC00115 LINC01128 LOC729737 TMEM88B TNFRSF4 LOC105378592 FAM138A LOC100287934 SLC35E2 OR4F29 ISG15 OR4F5 WASH7P LOC101928626 CFAP74 LOC100133331 MIR6726 TAS1R3
dgv49n54	Chr.1:2151050 - 2289783 on Build GRCh38	Loss	PRKCZ SKI LOC100506504 FAAP20 LOC105378592
nsv951530	Chr.1:2153662 - 2229961 on Build GRCh38	Deletion	PRKCZ SKI LOC100506504 FAAP20 LOC105378592
nsv470682	Chr.1:2188394 - 2378754 on Build GRCh38	Loss	LOC100129534 SKI MORN1 FAAP20 LOC105378592
nsv834557	Chr.1:2117631 - 2311104 on Build GRCh38	Loss	PRKCZ SKI LOC100506504 FAAP20 LOC105378592
nsv818111	Chr.1:2208822 - 2224923 on Build GRCh38	Loss	FAAP20 LOC105378592

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cellular response to DNA damage stimulus
translesion synthesis
interstrand cross-link repair

Function(s)

protein binding
polyubiquitin binding
ubiquitin binding
metal ion binding
K63-linked polyubiquitin binding