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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1221168 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03381543_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK000717.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK126927.1 1 184
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv159887 Chr.1:1217713 - 1222580 on Build GRCh38 Deletion SDF4
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication RNF223 MIR429 TTLL10 CPSF3L FAM132A MIR6726 ACAP3 LOC105378948 AGRN LOC100288175 TNFRSF18 LINC01342 SCNN1D TAS1R3 MIR200B MIR200A MIR6727 TTLL10-AS1 SDF4 B3GALT6 UBE2J2 TNFRSF4 C1orf159 CPTP PUSL1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MIB2 MMP23A FAM87B LOC284600 MIR6726 NADK ACAP3 NOC2L FAM41C LOC148413 CCNL2 SAMD11 ANKRD65 MMP23B LINC00115 LOC102724312 LOC107985729 CDK11B SCNN1D TAS1R3 PERM1 MIR200B MIR200A AURKAIP1 TTLL10-AS1 SLC35E2B UBE2J2 LOC100130417 TMEM88B TNFRSF4 PUSL1 MRPL20 SSU72 ATAD3B RNF223 ATAD3A MIR429 TTLL10 CPSF3L FAM132A VWA1 LOC100287934 ATAD3C ISG15 LOC107985728 LOC105378948 DVL1 AGRN LOC100288175 LINC01128 TNFRSF18 PLEKHN1 LOC100288069 LINC01342 SLC35E2 FNDC10 MIR6808 MXRA8 MIR6727 SDF4 B3GALT6 TMEM240 C1orf159 KLHL17 CPTP CDK11A HES4
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss OR4F5 LOC105378589 FAM87B LOC284600 ACAP3 NOC2L DDX11L1 LOC148413 CCNL2 SAMD11 ANKRD65 MMP23B LOC100506504 TAS1R3 MIR1302-2 MTND1P23 MIR200B TTLL10-AS1 LOC107984841 SSU72 RNF223 MIR429 TTLL10 LOC100287934 ATAD3C LOC107985728 LOC105378948 DVL1 LOC100288175 TNFRSF18 PLEKHN1 MIR6859-2 FAAP20 LOC100133331 MIR6808 MXRA8 FAM138A SDF4 GABRD OR4F16 LOC105378947 TMEM240 C1orf159 KLHL17 CPTP SKI MIB2 MMP23A MIR6723 MIR6726 NADK FAM41C LOC105378591 CFAP74 LINC00115 LOC102724312 LOC107985729 CDK11B SCNN1D PERM1 MIR200A AURKAIP1 SLC35E2B UBE2J2 LOC100130417 TMEM88B TNFRSF4 PUSL1 MRPL20 GNB1 MTND2P28 ATAD3B CALML6 ATAD3A CPSF3L TMEM52 FAM132A VWA1 LOC102725121 LOC100134822 ISG15 AGRN LINC01128 WASH7P MORN1 LOC100288069 LINC01342 SLC35E2 MIR6859-1 FNDC10 LOC100132287 PRKCZ OR4F29 LOC100129534 MIR6727 LOC105378949 B3GALT6 LOC105378592 LOC729737 LOC101928626 CDK11A HES4
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss ACAP3 SDF4 B3GALT6 UBE2J2 SCNN1D FAM132A MIR6726
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss RNF223 MIR429 TTLL10 FAM87B LOC284600 FAM132A NOC2L FAM41C ISG15 LOC107985728 SAMD11 LOC105378948 AGRN LOC100288175 LINC00115 LINC01128 TNFRSF18 PLEKHN1 LINC01342 PERM1 MIR200B MIR200A TTLL10-AS1 SDF4 B3GALT6 UBE2J2 LOC100130417 TNFRSF4 C1orf159 KLHL17 HES4
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MIB2 SSU72 ATAD3B ATAD3A MIR429 TTLL10 CPSF3L FAM132A VWA1 MIR6726 ACAP3 ATAD3C LOC148413 CCNL2 DVL1 ANKRD65 MMP23B TNFRSF18 LOC102724312 LOC107985729 CDK11B LINC01342 SCNN1D TAS1R3 FNDC10 MIR6808 MIR200B MXRA8 MIR200A AURKAIP1 MIR6727 TTLL10-AS1 SDF4 B3GALT6 UBE2J2 TMEM240 TMEM88B TNFRSF4 C1orf159 CPTP PUSL1 MRPL20
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain RNF223 MIR429 TTLL10 CPSF3L LOC284600 FAM132A MIR6726 ACAP3 NOC2L ISG15 LOC148413 LOC107985728 CCNL2 SAMD11 LOC105378948 DVL1 AGRN ANKRD65 LOC100288175 TNFRSF18 PLEKHN1 LINC01342 SCNN1D TAS1R3 PERM1 MIR6808 MIR200B MXRA8 MIR200A AURKAIP1 MIR6727 TTLL10-AS1 SDF4 B3GALT6 UBE2J2 LOC100130417 TMEM88B TNFRSF4 C1orf159 KLHL17 CPTP PUSL1 MRPL20 HES4
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain TNFRSF18 RNF223 LINC01342 MIR429 SCNN1D TTLL10 FAM132A MIR200B MIR200A TTLL10-AS1 SDF4 B3GALT6 UBE2J2 TNFRSF4 C1orf159 LOC105378948
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss TNFRSF18 RNF223 LINC01342 MIR429 SCNN1D TTLL10 FAM132A MIR200B MIR200A MIR6726 ACAP3 TTLL10-AS1 SDF4 B3GALT6 UBE2J2 TNFRSF4 C1orf159
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain TNFRSF18 MIR429 SCNN1D TTLL10 CPSF3L FAM132A MIR200B MIR200A MIR6726 ACAP3 MIR6727 TTLL10-AS1 SDF4 B3GALT6 UBE2J2 TNFRSF4 PUSL1
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10-AS1 TNFRSF18 SDF4 B3GALT6 TTLL10 TNFRSF4

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