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See other SDF4 CNV Assays ›
Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1227187 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03381581_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication CPTP LOC100288175 TTLL10-AS1 TNFRSF4 TTLL10 TNFRSF18 UBE2J2 LOC105378948 FAM132A MIR429 SCNN1D MIR200B RNF223 ACAP3 PUSL1 LINC01342 B3GALT6 MIR6726 AGRN MIR6727 SDF4 MIR200A C1orf159 CPSF3L TAS1R3
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC102724312 CPTP LOC100288175 VWA1 MIB2 TTLL10-AS1 ISG15 HES4 TTLL10 CDK11B TNFRSF18 TMEM88B MMP23B LOC107985728 FAM41C CDK11A MMP23A PLEKHN1 PERM1 FNDC10 LINC01128 RNF223 ACAP3 LINC01342 AGRN DVL1 SDF4 MIR200A SAMD11 LOC100288069 MXRA8 KLHL17 AURKAIP1 C1orf159 SSU72 LINC00115 LOC107985729 CCNL2 LOC100287934 TNFRSF4 ATAD3C UBE2J2 LOC105378948 FAM132A ATAD3B ANKRD65 LOC148413 ATAD3A NADK MIR6808 MIR429 SCNN1D FAM87B MIR200B LOC284600 TMEM240 SLC35E2B PUSL1 B3GALT6 MIR6726 MIR6727 NOC2L SLC35E2 LOC100130417 MRPL20 CPSF3L TAS1R3
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss TTLL10-AS1 MTND2P28 TTLL10 SKI TNFRSF18 CDK11A MMP23A MIR6859-2 PLEKHN1 MIR1302-2 FNDC10 LINC01128 ACAP3 WASH7P CFAP74 DVL1 SDF4 LOC100506504 MXRA8 AURKAIP1 C1orf159 LOC105378592 LOC107985729 CCNL2 TNFRSF4 CALML6 ATAD3C UBE2J2 LOC105378948 MIR6723 MIR429 OR4F29 FAM87B LOC105378947 TMEM240 SLC35E2B LOC105378591 B3GALT6 MIR6726 LOC105378589 DDX11L1 LOC100130417 LOC107984841 GABRD MRPL20 TAS1R3 LOC102724312 CPTP LOC102725121 LOC100288175 VWA1 MIB2 ISG15 HES4 FAAP20 CDK11B TMEM88B MMP23B LOC107985728 FAM41C TMEM52 LOC100134822 PERM1 LOC100133331 RNF223 LINC01342 AGRN MIR200A SAMD11 LOC100288069 KLHL17 SSU72 LINC00115 LOC729737 PRKCZ OR4F5 LOC100287934 MIR6859-1 OR4F16 FAM138A FAM132A ATAD3B ANKRD65 LOC148413 ATAD3A LOC100129534 NADK MIR6808 SCNN1D MIR200B LOC101928626 LOC284600 LOC105378949 PUSL1 MORN1 MIR6727 LOC100132287 MTND1P23 NOC2L SLC35E2 GNB1 CPSF3L
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss SCNN1D SDF4 UBE2J2 FAM132A ACAP3 B3GALT6 MIR6726
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LINC00115 LOC100288175 TTLL10-AS1 ISG15 HES4 TNFRSF4 TTLL10 TNFRSF18 UBE2J2 LOC105378948 FAM132A LOC107985728 FAM41C MIR429 PLEKHN1 FAM87B MIR200B LOC284600 PERM1 LINC01128 RNF223 LINC01342 B3GALT6 AGRN SDF4 MIR200A SAMD11 NOC2L KLHL17 LOC100130417 C1orf159
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion LOC102724312 CPTP SSU72 VWA1 MIB2 TTLL10-AS1 LOC107985729 CCNL2 TNFRSF4 TTLL10 ATAD3C CDK11B TNFRSF18 TMEM88B UBE2J2 FAM132A ATAD3B ANKRD65 LOC148413 ATAD3A MMP23B MIR6808 MIR429 SCNN1D MIR200B TMEM240 FNDC10 ACAP3 PUSL1 LINC01342 B3GALT6 MIR6726 MIR6727 DVL1 SDF4 MIR200A MXRA8 AURKAIP1 C1orf159 MRPL20 CPSF3L TAS1R3
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain CPTP LOC100288175 TTLL10-AS1 ISG15 HES4 CCNL2 TNFRSF4 TTLL10 TNFRSF18 TMEM88B UBE2J2 LOC105378948 FAM132A ANKRD65 LOC148413 MIR6808 LOC107985728 MIR429 PLEKHN1 SCNN1D MIR200B LOC284600 PERM1 RNF223 ACAP3 PUSL1 LINC01342 B3GALT6 MIR6726 AGRN MIR6727 DVL1 SDF4 MIR200A SAMD11 MXRA8 NOC2L KLHL17 LOC100130417 AURKAIP1 C1orf159 MRPL20 CPSF3L TAS1R3
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain SCNN1D MIR200B TTLL10-AS1 RNF223 TNFRSF4 LINC01342 TTLL10 B3GALT6 TNFRSF18 SDF4 MIR200A UBE2J2 LOC105378948 FAM132A MIR429 C1orf159
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss SCNN1D MIR200B TTLL10-AS1 RNF223 ACAP3 TNFRSF4 LINC01342 TTLL10 B3GALT6 MIR6726 TNFRSF18 SDF4 MIR200A UBE2J2 FAM132A MIR429 C1orf159
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain SCNN1D MIR200B TTLL10-AS1 ACAP3 PUSL1 TNFRSF4 TTLL10 B3GALT6 MIR6726 MIR6727 TNFRSF18 SDF4 MIR200A UBE2J2 FAM132A MIR429 CPSF3L
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TNFRSF18 SDF4 TTLL10-AS1 TNFRSF4 TTLL10 B3GALT6

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