Hs03382974_cn

• Gene Symbol: FAAP20
• Assay Reference Genome Location: Chr.1:2207705 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 199990
• Gene Name: Fanconi anemia core complex associated protein 20
• Gene Aliases: C1orf86, FP7162
• Location: Chr.1:2184460-2212720 on Build GRCh38
• Assay Gene Location: Overlaps Intron 2 - Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAAP20	NM_001146310.1			NP_001139782.1
	NM_001282670.1			NP_001269599.1
	AK126870.1			BAC86730.1
	AK127994.1			BAC87220.1

Target Gene Details

• Entrez Gene ID: 105378592
• Gene Name: uncharacterized LOC105378592
• Gene Aliases: -
• Location: Chr.1:2207597-2215193 on Build GRCh38
• Assay Gene Location: Overlaps Intron 4 - Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105378592	XM_017003076.1			XP_016858565.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	CPTP MTND2P28 TNFRSF18 MIR6726 PRKCZ CCNL2 LOC105378592 LOC105378949 MIR6808 LOC100506504 GABRD PERM1 LOC729737 CALML6 FAAP20 LOC102724312 MIR6859-1 LOC100288069 C1orf159 HES4 MIR6727 SCNN1D LOC100134822 FNDC10 LOC102725121 PLEKHN1 GNB1 LOC105378947 ISG15 LINC01128 MMP23B MIR1302-2 ATAD3B SAMD11 LOC105378948 LOC284600 AGRN MXRA8 WASH7P CFAP74 DVL1 FAM132A LOC100132287 SLC35E2B FAM87B MIR200A MMP23A FAM41C MIR200B LOC100287934 LOC107985728 RNF223 LOC101928626 TAS1R3 ACAP3 LINC01342 ANKRD65 NOC2L LOC100130417 LOC107984841 LOC100133331 LOC105378589 OR4F16 LOC100288175 MIR6859-2 SDF4 LINC00115 MIR429 LOC107985729 AURKAIP1 SLC35E2 MRPL20 ATAD3C TMEM240 B3GALT6 VWA1 ATAD3A LOC105378591 TTLL10 NADK TMEM88B TTLL10-AS1 CPSF3L OR4F5 MORN1 UBE2J2 PUSL1 FAM138A TNFRSF4 LOC148413 TMEM52 SKI SSU72 MTND1P23 MIR6723 LOC100129534 OR4F29 CDK11B DDX11L1 MIB2 CDK11A KLHL17
dgv49n54	Chr.1:2151050 - 2289783 on Build GRCh38	Loss	PRKCZ LOC105378592 FAAP20 LOC100506504 SKI
nsv951530	Chr.1:2153662 - 2229961 on Build GRCh38	Deletion	PRKCZ LOC105378592 FAAP20 LOC100506504 SKI
nsv470682	Chr.1:2188394 - 2378754 on Build GRCh38	Loss	LOC105378592 LOC100129534 FAAP20 MORN1 SKI
nsv834557	Chr.1:2117631 - 2311104 on Build GRCh38	Loss	PRKCZ LOC105378592 FAAP20 LOC100506504 SKI

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cellular response to DNA damage stimulus
translesion synthesis
interstrand cross-link repair

Function(s)

protein binding
polyubiquitin binding
ubiquitin binding
metal ion binding
K63-linked polyubiquitin binding