Hs03382974_cn

• Gene Symbol: FAAP20
• Assay Reference Genome Location: Chr.1:2207705 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 199990
• Gene Name: Fanconi anemia core complex associated protein 20
• Gene Aliases: C1orf86, FP7162
• Location: Chr.1:2184460-2212720 on Build GRCh38
• Assay Gene Location: Overlaps Intron 2 - Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAAP20	NM_001146310.1			NP_001139782.1
	NM_001282670.1			NP_001269599.1
	AK126870.1			BAC86730.1
	AK127994.1			BAC87220.1

Target Gene Details

• Entrez Gene ID: 105378592
• Gene Name: uncharacterized LOC105378592
• Gene Aliases: -
• Location: Chr.1:2207597-2215193 on Build GRCh38
• Assay Gene Location: Overlaps Intron 4 - Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105378592	XM_017003076.1			XP_016858565.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv461727	Chr.1:2151050 - 2251031 on Build GRCh38	Loss	FAAP20 PRKCZ LOC105378592 LOC100506504 SKI
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	MIR200A LOC100288175 MIB2 SKI MIR6859-2 OR4F29 TAS1R3 LOC100130417 B3GALT6 LOC107984841 MIR429 LOC100134822 MIR6859-1 LOC729737 MORN1 TMEM240 FAM87B LOC107985728 MMP23B CDK11B PUSL1 LOC148413 SSU72 NOC2L MIR6726 MIR1302-2 LOC100288069 LOC105378592 FAAP20 AURKAIP1 TTLL10 AGRN LOC284600 SAMD11 LINC01128 MIR200B TNFRSF4 SDF4 ATAD3C LOC107985729 FAM138A MIR6727 WASH7P ATAD3B CPSF3L LOC100287934 LINC01342 UBE2J2 SCNN1D OR4F16 LOC105378949 LOC102725121 LOC101928626 DVL1 LOC105378947 LOC102724312 TMEM88B MIR6723 ANKRD65 LOC105378948 LOC100132287 FNDC10 OR4F5 VWA1 GABRD RNF223 C1orf159 CFAP74 LOC100133331 MMP23A MXRA8 MTND1P23 CPTP LOC105378589 CALML6 PRKCZ ISG15 SLC35E2B SLC35E2 FAM41C HES4 LOC100506504 TTLL10-AS1 CDK11A LOC105378591 TNFRSF18 PERM1 MTND2P28 ACAP3 CCNL2 DDX11L1 LOC100129534 PLEKHN1 GNB1 MIR6808 ATAD3A FAM132A LINC00115 MRPL20 TMEM52 KLHL17 NADK
nsv951530	Chr.1:2153662 - 2229961 on Build GRCh38	Deletion	FAAP20 PRKCZ LOC105378592 LOC100506504 SKI
nsv470682	Chr.1:2188394 - 2378754 on Build GRCh38	Loss	LOC100129534 FAAP20 MORN1 LOC105378592 SKI
nsv834557	Chr.1:2117631 - 2311104 on Build GRCh38	Loss	FAAP20 PRKCZ LOC105378592 LOC100506504 SKI

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cellular response to DNA damage stimulus
translesion synthesis
interstrand cross-link repair

Function(s)

protein binding
polyubiquitin binding
ubiquitin binding
metal ion binding
K63-linked polyubiquitin binding