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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1553940 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03383309_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss ATAD3C ATAD3A ATAD3B VWA1 LOC107985729 SSU72 ANKRD65 LOC102724312 TMEM240 TMEM88B
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LINC01342 MIB2 CDK11A SCNN1D ATAD3C ATAD3A RNF223 PERM1 MMP23B B3GALT6 TNFRSF18 ISG15 TAS1R3 NADK MXRA8 LOC100287934 AGRN HES4 SAMD11 SLC35E2B ATAD3B FAM132A CCNL2 ACAP3 MRPL20 CPTP CDK11B MIR200A LOC105378948 LOC107985729 PLEKHN1 ANKRD65 TMEM88B LINC00115 MIR200B LOC100130417 LOC148413 LOC284600 LINC01128 SSU72 TMEM240 NOC2L LOC100288069 MMP23A SLC35E2 VWA1 FAM87B MIR6727 FAM41C TTLL10 MIR6808 TTLL10-AS1 DVL1 UBE2J2 TNFRSF4 LOC107985728 C1orf159 MIR429 FNDC10 LOC102724312 PUSL1 AURKAIP1 CPSF3L KLHL17 SDF4 LOC100288175 MIR6726
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC105378947 SCNN1D LOC105378591 MTND2P28 SKI CALML6 LOC101928626 RNF223 PERM1 MMP23B B3GALT6 TNFRSF18 ISG15 TAS1R3 AGRN SAMD11 MTND1P23 FAM132A ACAP3 OR4F5 MRPL20 OR4F29 LOC105378948 LOC107985729 PLEKHN1 LOC729737 LOC105378592 OR4F16 LOC148413 LINC01128 TMEM240 LOC100288069 MMP23A SLC35E2 FAM41C TTLL10-AS1 DVL1 UBE2J2 FNDC10 MIR6859-1 LOC102724312 PUSL1 LOC100288175 LINC01342 MIB2 FAM138A CDK11A ATAD3C LOC100134822 ATAD3A LOC105378589 NADK PRKCZ MXRA8 LOC100287934 MIR1302-2 LOC100506504 HES4 SLC35E2B ATAD3B CCNL2 CFAP74 FAAP20 CPTP MIR6723 LOC100132287 CDK11B MIR200A GNB1 ANKRD65 TMEM88B LINC00115 MIR200B LOC100130417 TMEM52 LOC100129534 LOC284600 SSU72 DDX11L1 NOC2L VWA1 MIR6859-2 FAM87B MIR6727 LOC102725121 LOC100133331 TTLL10 MIR6808 LOC105378949 TNFRSF4 LOC107985728 GABRD C1orf159 MIR429 MORN1 AURKAIP1 CPSF3L KLHL17 LOC107984841 SDF4 WASH7P MIR6726
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion LINC01342 MIR200B MIB2 SCNN1D ATAD3C ATAD3A LOC148413 SSU72 TMEM240 MMP23B B3GALT6 VWA1 MIR6727 TNFRSF18 TAS1R3 MXRA8 TTLL10 MIR6808 TTLL10-AS1 DVL1 UBE2J2 TNFRSF4 ATAD3B C1orf159 FAM132A MIR429 FNDC10 CCNL2 ACAP3 LOC102724312 PUSL1 AURKAIP1 MRPL20 CPSF3L CPTP CDK11B SDF4 MIR200A LOC107985729 MIR6726 ANKRD65 TMEM88B
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain ATAD3C ATAD3A LOC148413 ATAD3B CCNL2 SSU72 LOC102724312 TMEM240 MRPL20 VWA1 LOC107985729 ANKRD65 TMEM88B
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss MIB2 CDK11A TMEM52 ATAD3C ATAD3A LOC148413 LOC105378589 LOC105378591 CALML6 SSU72 TMEM240 MMP23A MMP23B SLC35E2 VWA1 NADK PRKCZ LOC105378949 SLC35E2B ATAD3B GABRD FNDC10 CCNL2 LOC102724312 CFAP74 MRPL20 CDK11B LOC107985729 GNB1 ANKRD65 TMEM88B

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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