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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1553940 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03383309_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss ATAD3B TMEM88B ATAD3C LOC102724312 SSU72 ANKRD65 LOC107985729 TMEM240 ATAD3A VWA1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MIR6727 LOC100288069 CDK11B PUSL1 LOC148413 RNF223 CCNL2 ANKRD65 B3GALT6 TTLL10-AS1 MIR429 ATAD3B NADK FAM87B LOC107985728 MMP23A MMP23B ATAD3C MRPL20 MXRA8 LOC105378948 TTLL10 DVL1 TNFRSF18 ATAD3A NOC2L PERM1 VWA1 TMEM88B LOC284600 HES4 LOC102724312 AURKAIP1 SSU72 SLC35E2B MIR200A PLEKHN1 LOC107985729 SLC35E2 FNDC10 AGRN SAMD11 MIR6808 CPSF3L CPTP MIR200B ACAP3 LOC100130417 TNFRSF4 LINC01128 LOC100288175 MIR6726 CDK11A TMEM240 C1orf159 ISG15 LINC01342 SCNN1D LINC00115 SDF4 KLHL17 MIB2 LOC100287934 TAS1R3 FAM41C UBE2J2 FAM132A
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100288069 MTND1P23 DDX11L1 LOC105378589 CALML6 PUSL1 CFAP74 RNF223 CCNL2 LOC102725121 B3GALT6 TTLL10-AS1 MIR429 MIR6859-1 OR4F16 NADK MMP23B TNFRSF18 MTND2P28 NOC2L PERM1 LOC284600 LOC729737 HES4 LOC102724312 AURKAIP1 SSU72 PLEKHN1 SLC35E2 LOC100134822 AGRN MIR6808 LOC101928626 CPSF3L CPTP MIR200B LOC100130417 TNFRSF4 LOC100288175 CDK11A OR4F5 TMEM240 ISG15 SKI LINC01342 SCNN1D LINC00115 KLHL17 LOC100287934 TAS1R3 FAAP20 LOC105378947 MIR6727 GNB1 CDK11B LOC148413 ANKRD65 TMEM52 MIR1302-2 MIR6859-2 ATAD3B FAM87B LOC107985728 MMP23A ATAD3C MRPL20 MXRA8 WASH7P LOC105378948 TTLL10 DVL1 ATAD3A VWA1 TMEM88B LOC100133331 MIR6723 SLC35E2B MIR200A LOC105378592 LOC107985729 LOC105378949 PRKCZ FNDC10 SAMD11 LOC100506504 LOC107984841 OR4F29 ACAP3 LINC01128 MIR6726 FAM138A C1orf159 SDF4 LOC100129534 LOC105378591 LOC100132287 MIB2 MORN1 GABRD FAM41C UBE2J2 FAM132A
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion FNDC10 MIR6727 MIR6808 CDK11B CPSF3L PUSL1 LOC148413 CPTP MIR200B ACAP3 CCNL2 TNFRSF4 MIR6726 ANKRD65 B3GALT6 TTLL10-AS1 MIR429 TMEM240 C1orf159 ATAD3B LINC01342 SCNN1D SDF4 MMP23B ATAD3C MRPL20 MXRA8 TTLL10 DVL1 TNFRSF18 ATAD3A VWA1 TMEM88B MIB2 LOC102724312 AURKAIP1 SSU72 TAS1R3 MIR200A UBE2J2 LOC107985729 FAM132A
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain ATAD3B ATAD3C MRPL20 LOC148413 ATAD3A VWA1 CCNL2 TMEM88B LOC102724312 SSU72 ANKRD65 LOC107985729 TMEM240
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss LOC105378949 PRKCZ FNDC10 GNB1 CDK11B LOC105378589 CALML6 LOC148413 CFAP74 CCNL2 ANKRD65 TMEM52 CDK11A TMEM240 ATAD3B NADK MMP23A MMP23B LOC105378591 ATAD3C MRPL20 ATAD3A VWA1 TMEM88B MIB2 GABRD LOC102724312 SSU72 SLC35E2B LOC107985729 SLC35E2

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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