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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1560957 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03383829_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss LOC102724312 ATAD3C TMEM240 TMEM88B ANKRD65 ATAD3A LOC107985729 SSU72 VWA1 ATAD3B
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LINC01128 C1orf159 B3GALT6 ANKRD65 LOC100130417 FAM132A NOC2L ISG15 MIB2 RNF223 DVL1 TAS1R3 FNDC10 SAMD11 LOC148413 LOC107985729 LOC284600 SLC35E2B CDK11B SLC35E2 CPTP MMP23B MXRA8 MRPL20 CPSF3L MIR200B CCNL2 AURKAIP1 LOC100288069 UBE2J2 CDK11A FAM41C LOC100288175 PLEKHN1 MMP23A PERM1 FAM87B MIR6727 TTLL10-AS1 LOC105378948 KLHL17 LOC102724312 MIR6808 PUSL1 LINC00115 ATAD3C TMEM240 TMEM88B AGRN ATAD3A SCNN1D TTLL10 LOC107985728 VWA1 ATAD3B HES4 SDF4 MIR6726 LOC100287934 ACAP3 TNFRSF18 MIR429 LINC01342 MIR200A SSU72 TNFRSF4 NADK
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC729737 GABRD OR4F16 B3GALT6 ANKRD65 NOC2L MIB2 RNF223 DVL1 FNDC10 LOC148413 LOC107985729 MIR6859-1 LOC107984841 SLC35E2B SLC35E2 DDX11L1 CPTP MORN1 MMP23B WASH7P MXRA8 MRPL20 LOC105378592 PRKCZ OR4F5 MIR200B FAM138A CALML6 AURKAIP1 LOC100288069 FAM41C LOC100288175 LOC100133331 PLEKHN1 PERM1 MIR6727 LOC102724312 PUSL1 ATAD3C CFAP74 TMEM240 AGRN ATAD3A TTLL10 LOC105378591 FAAP20 MIR6859-2 ATAD3B HES4 TNFRSF18 SKI MIR429 LINC01128 LOC100134822 C1orf159 MIR6723 LOC100130417 FAM132A ISG15 TAS1R3 SAMD11 LOC284600 CDK11B LOC105378589 MIR1302-2 GNB1 CPSF3L LOC101928626 OR4F29 LOC100132287 CCNL2 UBE2J2 CDK11A MTND1P23 TMEM52 MMP23A FAM87B LOC100506504 MTND2P28 TTLL10-AS1 LOC105378948 LOC105378947 KLHL17 MIR6808 LINC00115 LOC105378949 TMEM88B SCNN1D LOC107985728 LOC102725121 VWA1 SDF4 MIR6726 LOC100287934 ACAP3 LINC01342 MIR200A SSU72 TNFRSF4 NADK LOC100129534
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion C1orf159 B3GALT6 ANKRD65 MIR6727 FAM132A TTLL10-AS1 MIB2 DVL1 TAS1R3 FNDC10 LOC102724312 MIR6808 PUSL1 ATAD3C TMEM240 TMEM88B LOC148413 ATAD3A LOC107985729 SCNN1D TTLL10 CDK11B CPTP MMP23B MXRA8 VWA1 ATAD3B MRPL20 CPSF3L MIR200B SDF4 MIR6726 ACAP3 TNFRSF18 MIR429 LINC01342 MIR200A CCNL2 SSU72 AURKAIP1 TNFRSF4 UBE2J2
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain ANKRD65 VWA1 ATAD3B MRPL20 LOC102724312 ATAD3C TMEM240 TMEM88B LOC148413 ATAD3A LOC107985729 CCNL2 SSU72
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss TMEM52 MMP23A GABRD ANKRD65 MIB2 FNDC10 LOC102724312 LOC105378949 ATAD3C CFAP74 TMEM240 TMEM88B LOC148413 ATAD3A LOC107985729 SLC35E2B CDK11B LOC105378591 LOC105378589 SLC35E2 MMP23B VWA1 ATAD3B MRPL20 GNB1 PRKCZ CALML6 CCNL2 SSU72 NADK CDK11A

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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