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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1560957 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03383829_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss ATAD3A LOC107985729 VWA1 TMEM240 ANKRD65 SSU72 ATAD3C ATAD3B TMEM88B LOC102724312
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss SLC35E2 LOC107985729 SDF4 TNFRSF4 ATAD3B CDK11A LOC284600 AGRN NADK CCNL2 MIR6808 CPSF3L LOC105378948 SLC35E2B TMEM88B LOC100130417 LOC100287934 CDK11B FNDC10 DVL1 HES4 FAM132A ACAP3 ATAD3A FAM41C MMP23B KLHL17 SCNN1D LINC01342 TMEM240 B3GALT6 MIB2 LOC100288175 LOC100288069 MRPL20 FAM87B C1orf159 TAS1R3 AURKAIP1 TTLL10 LINC01128 LOC107985728 MIR429 ISG15 LINC00115 TTLL10-AS1 TNFRSF18 MIR200B MMP23A PLEKHN1 ANKRD65 ATAD3C LOC102724312 PERM1 MXRA8 SAMD11 MIR200A UBE2J2 MIR6727 SSU72 PUSL1 NOC2L LOC148413 MIR6726 VWA1 RNF223 CPTP
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss SLC35E2 SDF4 CFAP74 DDX11L1 GABRD AGRN CCNL2 MIR6808 LOC105378589 SLC35E2B TMEM88B LOC100287934 CDK11B LOC105378947 FAM132A ACAP3 LOC102725121 FAM41C MMP23B SCNN1D TMEM240 B3GALT6 MIB2 LOC100288069 GNB1 TAS1R3 TMEM52 AURKAIP1 TTLL10 LOC100129534 LOC100132287 LOC105378949 MTND1P23 LOC105378592 MIR200B MMP23A MIR6723 PLEKHN1 ANKRD65 LOC105378591 LOC102724312 PERM1 LOC100506504 LOC100133331 MIR200A SSU72 SKI PUSL1 NOC2L LOC148413 MIR6726 VWA1 MIR6859-2 RNF223 MORN1 OR4F16 LOC101928626 OR4F5 LOC107985729 TNFRSF4 LOC107984841 ATAD3B CDK11A LOC284600 NADK CPSF3L LOC105378948 LOC729737 LOC100130417 FNDC10 DVL1 HES4 ATAD3A KLHL17 MIR6859-1 LINC01342 FAM138A PRKCZ OR4F29 LOC100288175 MRPL20 FAM87B C1orf159 LINC01128 LOC107985728 CALML6 MIR429 ISG15 LINC00115 TTLL10-AS1 TNFRSF18 MTND2P28 ATAD3C MXRA8 SAMD11 UBE2J2 WASH7P MIR6727 FAAP20 LOC100134822 CPTP MIR1302-2
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion LOC107985729 SDF4 TNFRSF4 MIR429 ATAD3B TTLL10-AS1 TNFRSF18 MIR200B CCNL2 ANKRD65 MIR6808 CPSF3L ATAD3C TMEM88B LOC102724312 CDK11B FNDC10 MXRA8 DVL1 FAM132A ACAP3 ATAD3A MMP23B MIR200A UBE2J2 MIR6727 SCNN1D LINC01342 TMEM240 SSU72 B3GALT6 MIB2 PUSL1 LOC148413 MIR6726 MRPL20 C1orf159 VWA1 TAS1R3 AURKAIP1 CPTP TTLL10
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain ATAD3A LOC107985729 TMEM240 SSU72 ATAD3B LOC148413 MRPL20 VWA1 CCNL2 ANKRD65 ATAD3C TMEM88B LOC102724312
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss SLC35E2 LOC107985729 CALML6 LOC105378949 ATAD3B CFAP74 CDK11A GABRD NADK MMP23A CCNL2 ANKRD65 LOC105378589 LOC105378591 ATAD3C SLC35E2B TMEM88B LOC102724312 CDK11B FNDC10 ATAD3A MMP23B TMEM240 SSU72 PRKCZ MIB2 LOC148413 MRPL20 GNB1 VWA1 TMEM52

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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