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See other SDF4 CNV Assays ›
Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1231194 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03384685_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
DC405714.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TTLL10 UBE2J2 CPSF3L MIR6726 SCNN1D MIR200A TTLL10-AS1 TAS1R3 LOC105378948 SDF4 LOC100288175 RNF223 CPTP TNFRSF4 FAM132A B3GALT6 MIR200B AGRN C1orf159 PUSL1 TNFRSF18 ACAP3 MIR6727 MIR429 LINC01342
nsv821698 Chr.1:1228970 - 1234390 on Build GRCh38 Gain SDF4 B3GALT6
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MIR6808 TTLL10 LOC107985729 SCNN1D AURKAIP1 ANKRD65 LOC148413 ISG15 TAS1R3 LOC105378948 CDK11B SLC35E2 SDF4 HES4 LOC100288175 RNF223 DVL1 TNFRSF4 TMEM240 SSU72 ATAD3B B3GALT6 PERM1 NOC2L VWA1 KLHL17 PUSL1 LOC100287934 CDK11A MXRA8 MIR6727 LOC284600 MIR429 LINC01342 CCNL2 UBE2J2 CPSF3L LOC100288069 MIR6726 FAM87B LOC107985728 MIR200A TTLL10-AS1 MMP23B MRPL20 ATAD3A NADK CPTP MMP23A SAMD11 MIB2 FAM132A LOC102724312 MIR200B ATAD3C LINC01128 FNDC10 AGRN C1orf159 PLEKHN1 TNFRSF18 ACAP3 TMEM88B SLC35E2B LINC00115 FAM41C LOC100130417
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MIR6808 LOC100134822 TTLL10 SCNN1D LOC148413 ISG15 LOC105378948 CDK11B SLC35E2 HES4 CFAP74 MIR6859-2 DVL1 TMEM240 LOC729737 SSU72 ATAD3B B3GALT6 SKI KLHL17 LOC100287934 DDX11L1 UBE2J2 CPSF3L FAM87B TTLL10-AS1 LOC101928626 MIR6723 MMP23B WASH7P ATAD3A LOC105378589 NADK LOC107984841 CPTP SAMD11 MIB2 LOC102724312 ATAD3C LINC01128 FNDC10 AGRN TNFRSF18 GABRD OR4F5 TMEM88B SLC35E2B LOC100132287 LOC100133331 GNB1 LOC107985729 AURKAIP1 MTND1P23 ANKRD65 TAS1R3 SDF4 LOC100288175 LOC105378592 RNF223 LOC105378591 CALML6 TNFRSF4 FAAP20 PERM1 NOC2L VWA1 PRKCZ PUSL1 MTND2P28 CDK11A MXRA8 MIR6727 LOC284600 MIR429 LINC01342 CCNL2 TMEM52 LOC100288069 MIR6726 LOC105378947 LOC100129534 LOC107985728 MIR200A MORN1 MIR6859-1 LOC100506504 MRPL20 MIR1302-2 MMP23A FAM132A OR4F29 LOC102725121 MIR200B OR4F16 C1orf159 PLEKHN1 ACAP3 LINC00115 FAM41C LOC105378949 FAM138A LOC100130417
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss SCNN1D ACAP3 UBE2J2 SDF4 FAM132A B3GALT6 MIR6726
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss TTLL10 UBE2J2 FAM87B LOC107985728 MIR200A TTLL10-AS1 ISG15 LOC105378948 SDF4 HES4 LOC100288175 RNF223 SAMD11 TNFRSF4 FAM132A B3GALT6 MIR200B PERM1 LINC01128 NOC2L AGRN C1orf159 KLHL17 PLEKHN1 TNFRSF18 LINC00115 FAM41C LOC284600 MIR429 LINC01342 LOC100130417
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MIR6808 CCNL2 TTLL10 UBE2J2 CPSF3L MIR6726 LOC107985729 SCNN1D AURKAIP1 MIR200A ANKRD65 LOC148413 TTLL10-AS1 TAS1R3 MMP23B CDK11B SDF4 MRPL20 ATAD3A CPTP MIB2 DVL1 TNFRSF4 TMEM240 SSU72 ATAD3B FAM132A B3GALT6 LOC102724312 MIR200B ATAD3C FNDC10 VWA1 C1orf159 PUSL1 TNFRSF18 ACAP3 MXRA8 MIR6727 TMEM88B MIR429 LINC01342
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MIR6808 CCNL2 TTLL10 UBE2J2 CPSF3L MIR6726 SCNN1D AURKAIP1 LOC107985728 MIR200A ANKRD65 LOC148413 TTLL10-AS1 ISG15 TAS1R3 LOC105378948 SDF4 HES4 MRPL20 LOC100288175 RNF223 CPTP SAMD11 DVL1 TNFRSF4 FAM132A B3GALT6 MIR200B PERM1 NOC2L AGRN C1orf159 KLHL17 PLEKHN1 PUSL1 TNFRSF18 ACAP3 MXRA8 MIR6727 TMEM88B LOC284600 MIR429 LINC01342 LOC100130417
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain TTLL10 UBE2J2 TNFRSF4 FAM132A B3GALT6 MIR200B SCNN1D C1orf159 MIR200A TTLL10-AS1 TNFRSF18 LOC105378948 SDF4 MIR429 LINC01342 RNF223
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss TTLL10 UBE2J2 TNFRSF4 FAM132A B3GALT6 MIR6726 MIR200B SCNN1D C1orf159 MIR200A TTLL10-AS1 TNFRSF18 ACAP3 SDF4 MIR429 LINC01342 RNF223
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain TTLL10 UBE2J2 TNFRSF4 CPSF3L FAM132A B3GALT6 MIR6726 MIR200B SCNN1D MIR200A PUSL1 TTLL10-AS1 TNFRSF18 ACAP3 MIR6727 SDF4 MIR429
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10-AS1 TNFRSF18 TTLL10 TNFRSF4 SDF4 B3GALT6

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