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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1227843 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03385650_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication LOC100288175 ACAP3 MIR429 MIR200B SDF4 C1orf159 LOC105378948 UBE2J2 TNFRSF18 CPSF3L SCNN1D PUSL1 RNF223 TTLL10-AS1 TTLL10 FAM132A MIR6727 MIR200A AGRN LINC01342 CPTP TNFRSF4 MIR6726 TAS1R3 B3GALT6
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC100288175 ACAP3 NOC2L PLEKHN1 LOC100288069 MRPL20 SDF4 C1orf159 SLC35E2B KLHL17 ATAD3A LOC107985728 LOC107985729 PUSL1 LOC100130417 RNF223 TTLL10 MIB2 CDK11A MIR200A LOC100287934 LOC284600 MMP23A LINC01342 CCNL2 CDK11B MXRA8 MMP23B MIR6726 TAS1R3 FAM41C B3GALT6 MIR6808 SLC35E2 HES4 ISG15 MIR429 MIR200B DVL1 LOC102724312 LOC105378948 UBE2J2 FNDC10 TNFRSF18 LOC148413 SSU72 CPSF3L AURKAIP1 NADK ATAD3B LINC00115 ANKRD65 TMEM240 SCNN1D PERM1 TTLL10-AS1 LINC01128 VWA1 FAM87B FAM132A MIR6727 AGRN TMEM88B CPTP ATAD3C TNFRSF4 SAMD11
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MTND2P28 PLEKHN1 LOC100288069 MRPL20 LOC105378592 OR4F5 SLC35E2B ATAD3A CALML6 FAAP20 LOC107985728 LOC107985729 PUSL1 TTLL10 CDK11A MMP23A LINC01342 CCNL2 LOC105378949 MMP23B MIR1302-2 TAS1R3 FAM41C DVL1 LOC100134822 LOC102724312 UBE2J2 WASH7P FNDC10 TNFRSF18 SSU72 CPSF3L LOC107984841 ATAD3B ANKRD65 TMEM240 GABRD LOC729737 LOC100129534 TTLL10-AS1 VWA1 PRKCZ AGRN SKI CPTP TMEM52 LOC100506504 ATAD3C OR4F16 OR4F29 LOC100288175 ACAP3 MIR6859-2 MIR6723 NOC2L SDF4 C1orf159 LOC100132287 KLHL17 MTND1P23 FAM138A CFAP74 GNB1 LOC105378589 LOC100130417 RNF223 MIB2 MIR200A LOC100287934 LOC284600 LOC102725121 CDK11B MXRA8 LOC105378947 MIR6726 B3GALT6 MIR6808 SLC35E2 HES4 ISG15 MIR429 MIR200B LOC105378948 LOC148413 AURKAIP1 NADK LINC00115 MORN1 SCNN1D LOC100133331 PERM1 DDX11L1 MIR6859-1 LINC01128 FAM87B FAM132A MIR6727 LOC101928626 TMEM88B TNFRSF4 LOC105378591 SAMD11
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss ACAP3 MIR6726 SDF4 FAM132A SCNN1D UBE2J2 B3GALT6
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LOC100288175 NOC2L PLEKHN1 HES4 ISG15 MIR429 MIR200B SDF4 C1orf159 LOC105378948 KLHL17 UBE2J2 TNFRSF18 LINC00115 LOC107985728 PERM1 LOC100130417 RNF223 TTLL10-AS1 LINC01128 FAM87B TTLL10 FAM132A MIR200A AGRN LOC284600 LINC01342 TNFRSF4 FAM41C B3GALT6 SAMD11
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion ACAP3 MIR6808 MRPL20 MIR429 MIR200B DVL1 SDF4 C1orf159 LOC102724312 UBE2J2 ATAD3A FNDC10 TNFRSF18 LOC148413 SSU72 CPSF3L AURKAIP1 ATAD3B ANKRD65 TMEM240 SCNN1D LOC107985729 PUSL1 TTLL10-AS1 VWA1 TTLL10 FAM132A MIB2 MIR6727 MIR200A LINC01342 CCNL2 TMEM88B CPTP CDK11B MXRA8 ATAD3C TNFRSF4 MMP23B MIR6726 TAS1R3 B3GALT6
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain LOC100288175 ACAP3 MIR6808 NOC2L PLEKHN1 HES4 ISG15 MRPL20 MIR429 MIR200B DVL1 SDF4 C1orf159 LOC105378948 KLHL17 UBE2J2 TNFRSF18 LOC148413 CPSF3L AURKAIP1 LOC107985728 ANKRD65 SCNN1D PERM1 PUSL1 LOC100130417 RNF223 TTLL10-AS1 TTLL10 FAM132A MIR6727 MIR200A AGRN LOC284600 LINC01342 CCNL2 TMEM88B CPTP MXRA8 TNFRSF4 MIR6726 TAS1R3 B3GALT6 SAMD11
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain RNF223 TTLL10-AS1 TTLL10 MIR429 MIR200B SDF4 C1orf159 FAM132A LOC105378948 MIR200A UBE2J2 LINC01342 TNFRSF18 TNFRSF4 SCNN1D B3GALT6
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss ACAP3 RNF223 TTLL10-AS1 TTLL10 MIR429 MIR200B SDF4 C1orf159 FAM132A MIR200A UBE2J2 LINC01342 TNFRSF18 TNFRSF4 MIR6726 SCNN1D B3GALT6
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain ACAP3 PUSL1 TTLL10-AS1 TTLL10 MIR429 MIR200B SDF4 FAM132A MIR6727 MIR200A UBE2J2 TNFRSF18 TNFRSF4 CPSF3L MIR6726 SCNN1D B3GALT6
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TNFRSF18 TTLL10-AS1 TNFRSF4 TTLL10 SDF4 B3GALT6

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More Information


Additional Information:

For this assay, SNP(s) [rs112328659] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

calmodulin-related

Gene Ontology Categories:

Function(s) Process(es)


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