Hs03429470_cn

• Gene Symbol: RGPD2
• Assay Reference Genome Location: Chr.2:87961268 on build GRCh38
• Cytoband: 2p11.2

Target Gene Details

• Entrez Gene ID: 729857
• Gene Name: RANBP2-like and GRIP domain containing 2
• Gene Aliases: NUP358, RANBP2L2, RGP2
• Location: Chr.2:87756955-87992819 on Build GRCh38
• Assay Gene Location: Within Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
RGPD2	XM_017004845.1			XP_016860334.1
	XM_017004848.1			XP_016860337.1
	XM_017004849.1			XP_016860338.1
	XM_017004850.1			XP_016860339.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv820913	Chr.2:87824780 - 87997734 on Build GRCh38	Deletion	RGPD2
nsv10070	Chr.2:87824674 - 87962085 on Build GRCh38	Gain	RGPD2
dgv6947n54	Chr.2:87815738 - 88850700 on Build GRCh38	Gain	FOXI3 THNSL2 EIF2AK3 LOC101928371 MIR4780 SMYD1 ANKRD36BP2 RPIA KRCC1 MIR4436A RGPD2 FABP1 LOC101928403 TEX37
nsv961809	Chr.2:87848435 - 87962305 on Build GRCh38	Duplication	RGPD2
esv2763649	Chr.2:86893372 - 88011471 on Build GRCh38	Gain+Loss	RGPD1 LOC102724642 ANAPC1P1 LOC730268 LOC285074 RGPD2 LINC00152 PLGLB1 PLGLB2 MIR4771-1 MIR4435-1
esv2759073	Chr.2:86878321 - 87996445 on Build GRCh38	Gain+Loss	RGPD1 LOC102724642 ANAPC1P1 LOC730268 LOC285074 RGPD2 LINC00152 PLGLB1 PLGLB2 MIR4771-1 MIR4435-1
nsv582383	Chr.2:87915816 - 88527080 on Build GRCh38	Gain	FOXI3 THNSL2 KRCC1 MIR4780 RGPD2 SMYD1 FABP1 TEX37
nsv516958	Chr.2:87203604 - 88000325 on Build GRCh38	Gain+Loss	LOC730268 RGPD2 LINC00152 PLGLB2 MIR4435-1
esv27348	Chr.2:87824906 - 87987979 on Build GRCh38	Gain	RGPD2
dgv61n16	Chr.2:87343737 - 90254660 on Build GRCh38	Deletion	IGKV3D-15 EIF2AK3 SMYD1 LINC00152 PLGLB2 IGKV1D-13 IGKC IGKV2-29 KRCC1 LOC730268 RGPD2 IGKV1-5 FABP1 LOC101928403 FOXI3 IGKV2-26 THNSL2 IGKV3-20 IGKV1D-8 LOC101928371 MIR4780 MIR4435-1 IGKV2-24 IGK ANKRD36BP2 RPIA LOC107985911 LOC101927050 MIR4436A TEX37
nsv1072005	Chr.2:87360367 - 90256528 on Build GRCh38	Deletion	IGKV3D-15 EIF2AK3 SMYD1 LINC00152 PLGLB2 IGKV1D-13 IGKC IGKV2-29 KRCC1 LOC730268 RGPD2 IGKV1-5 FABP1 LOC101928403 FOXI3 IGKV2-26 THNSL2 IGKV3-20 IGKV1D-8 LOC101928371 MIR4780 MIR4435-1 IGKV2-24 IGK ANKRD36BP2 RPIA LOC107985911 LOC101927050 MIR4436A TEX37
nsv1130752	Chr.2:87360364 - 90256525 on Build GRCh38	Deletion	IGKV3D-15 EIF2AK3 SMYD1 LINC00152 PLGLB2 IGKV1D-13 IGKC IGKV2-29 KRCC1 LOC730268 RGPD2 IGKV1-5 FABP1 LOC101928403 FOXI3 IGKV2-26 THNSL2 IGKV3-20 IGKV1D-8 LOC101928371 MIR4780 MIR4435-1 IGKV2-24 IGK ANKRD36BP2 RPIA LOC107985911 LOC101927050 MIR4436A TEX37
nsv829493	Chr.2:87845827 - 87997734 on Build GRCh38	Gain	RGPD2
nsv834288	Chr.2:87747710 - 87975409 on Build GRCh38	Gain	RGPD2 PLGLB2

More Information

Additional Information:

For this assay, SNP(s) [rs72847738] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Process(es)

protein targeting to Golgi