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See other ARHGEF4 CNV Assays ›
Gene Symbol
ARHGEF4
Assay Reference Genome
Location

Chr.2:130839425 on build GRCh38
Cytoband
2q21.1
Assay ID Hs03442738_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 50649

Gene Name:

 Rho guanine nucleotide exchange factor 4

Gene Aliases:

 ASEF, ASEF1, GEF4, STM6

Location:

 Chr.2:130836916-131047253 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ARHGEF4 XM_005263681.1 XP_005263738.1
XM_005263685.3 XP_005263742.1
XM_011511274.2 XP_011509576.1
XM_017004231.1 XP_016859720.1
AK127124.1

Target Gene Details

Entrez Gene ID:

 653269

Gene Name:

 POTE ankyrin domain family member I

Gene Aliases:

 POTE2beta

Location:

 Chr.2:130462245-131626428 on Build GRCh38

Assay Gene Location:
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
POTEI

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4074n100 Chr.2:130550793 - 131291209 on Build GRCh38 Gain PLEKHB2 CFC1 CYP4F30P ARHGEF4 LOC440910 TISP43 AMER3 POTEJ POTEI GPR148 POTEE FAM168B
dgv731e199 Chr.2:130678437 - 131300107 on Build GRCh38 Deletion PLEKHB2 CYP4F30P ARHGEF4 LOC440910 AMER3 POTEI GPR148 POTEE FAM168B
esv2670824 Chr.2:130625264 - 131605218 on Build GRCh38 Deletion CYP4F30P LOC440910 POTEKP LOC150776 NOC2LP2 MZT2A POTEI GPR148 POTEE CCDC74A PLEKHB2 LINC01120 ARHGEF4 WTH3DI MIR4784 AMER3 POTEJ TUBA3D FAM168B
nsv583136 Chr.2:130730100 - 130846832 on Build GRCh38 Loss ARHGEF4 AMER3 POTEI GPR148
nsv1014723 Chr.2:130720375 - 131379551 on Build GRCh38 Loss PLEKHB2 ARHGEF4 LOC440910 WTH3DI AMER3 POTEI GPR148 POTEE FAM168B
esv3893337 Chr.2:130722838 - 131194387 on Build GRCh38 Loss PLEKHB2 ARHGEF4 AMER3 POTEI GPR148 FAM168B
dgv616e201 Chr.2:130674635 - 131312550 on Build GRCh38 Deletion PLEKHB2 CYP4F30P ARHGEF4 LOC440910 AMER3 POTEI GPR148 POTEE FAM168B
nsv583135 Chr.2:130724905 - 131194388 on Build GRCh38 Loss PLEKHB2 ARHGEF4 AMER3 POTEI GPR148 FAM168B
nsv524021 Chr.2:130724906 - 131553515 on Build GRCh38 Loss LOC440910 LOC150776 NOC2LP2 MZT2A POTEI GPR148 POTEE CCDC74A PLEKHB2 LINC01120 ARHGEF4 WTH3DI MIR4784 AMER3 TUBA3D FAM168B
esv2760576 Chr.2:130634172 - 131521752 on Build GRCh38 Gain+Loss CYP4F30P LOC440910 LOC150776 NOC2LP2 MZT2A POTEI GPR148 POTEE PLEKHB2 LINC01120 ARHGEF4 WTH3DI MIR4784 AMER3 POTEJ TUBA3D FAM168B
esv2759092 Chr.2:129589265 - 132440430 on Build GRCh38 Gain+Loss ANKRD30BL NOC2LP2 MZT2B GPR148 CFC1B PLEKHB2 MIR663B LINC01120 ARHGEF4 ZNF806 CCDC115 TUBA3E PTPN18 POTEE C2orf27B POTEJ TUBA3D CCDC74B POTEKP POTEI LINC01087 RAB6C RAB6C-AS1 LOC389033 CYP4F62P MIR4784 AMER3 LOC101927924 FAM168B CFC1 CYP4F30P LOC100507460 SMPD4 MED15P9 LOC440910 NOC2LP1 LOC150776 POTEF C2orf27A MZT2A CCDC74A FAR2P2 GPR39 TISP43 WTH3DI LOC107985778 IMP4 FAR2P1 FAM201B LOC646743
nsv428403 Chr.2:129818076 - 130882067 on Build GRCh38 Loss CCDC74B MZT2B POTEI GPR148 CFC1B RAB6C RAB6C-AS1 LOC389033 CYP4F62P ARHGEF4 AMER3 LOC101927924 CFC1 CYP4F30P SMPD4 MED15P9 CCDC115 NOC2LP1 POTEF TUBA3E PTPN18 FAR2P2 TISP43 LOC107985778 IMP4 POTEJ FAR2P1 LOC646743
nsv523500 Chr.2:130835472 - 130853759 on Build GRCh38 Loss ARHGEF4 POTEI

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More Information


Additional Information:

For this assay, SNP(s) [rs73960344] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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