Hs03442896_cn

• Gene Symbol: LOC150776
• Assay Reference Genome Location: Chr.2:131492859 on build GRCh38
• Cytoband: 2q21.1

Target Gene Details

• Entrez Gene ID: 150776
• Gene Name: sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene
• Gene Aliases: -
• Location: Chr.2:131492813-131521576 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC150776	NR_026922.1
	DC407534.1

Target Gene Details

• Entrez Gene ID: 653269
• Gene Name: POTE ankyrin domain family member I
• Gene Aliases: POTE2beta
• Location: Chr.2:130462245-131626428 on Build GRCh38
• Assay Gene Location:

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
POTEI

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1006738	Chr.2:131369287 - 131508964 on Build GRCh38	Gain	TUBA3D LINC01120 LOC150776 MZT2A POTEI NOC2LP2 MIR4784
nsv459396	Chr.2:131319806 - 131540895 on Build GRCh38	Gain	TUBA3D LINC01120 LOC150776 MZT2A CCDC74A WTH3DI POTEI NOC2LP2 MIR4784
esv2670824	Chr.2:130625264 - 131605218 on Build GRCh38	Deletion	TUBA3D GPR148 CYP4F30P POTEE LINC01120 LOC440910 MZT2A WTH3DI PLEKHB2 POTEI POTEKP NOC2LP2 MIR4784 POTEJ LOC150776 CCDC74A FAM168B ARHGEF4 AMER3
dgv4079n100	Chr.2:131213210 - 131543555 on Build GRCh38	Loss	TUBA3D POTEE LINC01120 LOC440910 LOC150776 MZT2A CCDC74A WTH3DI POTEI NOC2LP2 MIR4784
nsv583140	Chr.2:131299593 - 131540895 on Build GRCh38	Gain	TUBA3D LINC01120 LOC440910 LOC150776 MZT2A CCDC74A WTH3DI POTEI NOC2LP2 MIR4784
dgv4075n100	Chr.2:130720375 - 131521740 on Build GRCh38	Gain	TUBA3D GPR148 POTEE LINC01120 LOC440910 MZT2A WTH3DI PLEKHB2 POTEI NOC2LP2 MIR4784 LOC150776 FAM168B ARHGEF4 AMER3
esv3592483	Chr.2:131477920 - 131527155 on Build GRCh38	Loss	TUBA3D LOC150776 MZT2A CCDC74A POTEI MIR4784
nsv428404	Chr.2:131023910 - 131858730 on Build GRCh38	Loss	TUBA3D POTEE LINC01120 LOC440910 MZT2A WTH3DI PLEKHB2 POTEI POTEKP LINC01087 NOC2LP2 MIR4784 LOC150776 CCDC74A C2orf27B C2orf27A FAM168B ARHGEF4 LOC100507460
esv3584079	Chr.2:131350116 - 131523250 on Build GRCh38	Loss	TUBA3D LINC01120 LOC150776 MZT2A CCDC74A WTH3DI POTEI NOC2LP2 MIR4784
esv3575300	Chr.2:131198972 - 131523250 on Build GRCh38	Gain	TUBA3D POTEE LINC01120 LOC440910 LOC150776 MZT2A CCDC74A WTH3DI POTEI NOC2LP2 MIR4784
dgv4080n100	Chr.2:131290833 - 131543555 on Build GRCh38	Gain	TUBA3D LINC01120 LOC440910 LOC150776 MZT2A CCDC74A WTH3DI POTEI NOC2LP2 MIR4784
nsv1002963	Chr.2:131384835 - 131589090 on Build GRCh38	Gain	TUBA3D LINC01120 LOC150776 MZT2A CCDC74A POTEI NOC2LP2 MIR4784
nsv834376	Chr.2:131426523 - 131595245 on Build GRCh38	Gain	TUBA3D LOC150776 MZT2A CCDC74A POTEI POTEKP NOC2LP2 MIR4784
nsv524021	Chr.2:130724906 - 131553515 on Build GRCh38	Loss	TUBA3D GPR148 POTEE LINC01120 LOC440910 MZT2A WTH3DI PLEKHB2 POTEI NOC2LP2 MIR4784 LOC150776 CCDC74A FAM168B ARHGEF4 AMER3
nsv979124	Chr.2:131461196 - 131549886 on Build GRCh38	Duplication	TUBA3D LOC150776 MZT2A CCDC74A POTEI MIR4784
esv2760576	Chr.2:130634172 - 131521752 on Build GRCh38	Gain+Loss	TUBA3D GPR148 CYP4F30P POTEE LINC01120 LOC440910 MZT2A WTH3DI PLEKHB2 POTEI NOC2LP2 MIR4784 POTEJ LOC150776 FAM168B ARHGEF4 AMER3
nsv1008539	Chr.2:131468769 - 131523332 on Build GRCh38	Gain	TUBA3D LOC150776 MZT2A CCDC74A POTEI MIR4784
esv2759092	Chr.2:129589265 - 132440430 on Build GRCh38	Gain+Loss	CCDC115 ZNF806 LOC107985778 NOC2LP2 RAB6C-AS1 CCDC74A C2orf27B LOC100507460 FAR2P2 TUBA3D GPR148 POTEE LOC440910 MZT2A LOC101927924 LOC150776 NOC2LP1 LOC646743 FAM201B FAM168B CFC1 POTEF AMER3 CCDC74B GPR39 WTH3DI TISP43 LINC01087 TUBA3E SMPD4 RAB6C C2orf27A ARHGEF4 MED15P9 CYP4F30P LINC01120 FAR2P1 PLEKHB2 POTEI LOC389033 POTEKP ANKRD30BL CFC1B MIR4784 MIR663B POTEJ PTPN18 IMP4 CYP4F62P MZT2B
dgv4077n100	Chr.2:131182622 - 131543555 on Build GRCh38	Gain	TUBA3D POTEE LINC01120 LOC440910 LOC150776 MZT2A CCDC74A WTH3DI POTEI NOC2LP2 MIR4784
esv34704	Chr.2:131323539 - 131678860 on Build GRCh38	Gain	TUBA3D LINC01120 LOC150776 MZT2A CCDC74A WTH3DI POTEI POTEKP LOC100507460 LINC01087 NOC2LP2 MIR4784
nsv997248	Chr.2:131390238 - 131985656 on Build GRCh38	Loss	TUBA3D LINC01120 MZT2A POTEI POTEKP LINC01087 NOC2LP2 MIR4784 LOC150776 CCDC74A C2orf27B C2orf27A LOC100507460
esv34412	Chr.2:131197674 - 131493393 on Build GRCh38	Gain	TUBA3D POTEE LINC01120 LOC440910 LOC150776 MZT2A WTH3DI POTEI NOC2LP2 MIR4784

More Information

Additional Information:

For this assay, SNP(s) [rs142365960] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation