Hs03442896_cn

• Gene Symbol: LOC150776
• Assay Reference Genome Location: Chr.2:131492859 on build GRCh38
• Cytoband: 2q21.1

Target Gene Details

• Entrez Gene ID: 150776
• Gene Name: sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene
• Gene Aliases: -
• Location: Chr.2:131492813-131521576 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC150776	NR_026922.1
	DC407534.1

Target Gene Details

• Entrez Gene ID: 653269
• Gene Name: POTE ankyrin domain family member I
• Gene Aliases: POTE2beta
• Location: Chr.2:130462245-131626428 on Build GRCh38
• Assay Gene Location:

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
POTEI

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1006738	Chr.2:131369287 - 131508964 on Build GRCh38	Gain	TUBA3D POTEI MIR4784 MZT2A LOC150776 LINC01120 NOC2LP2
nsv470486	Chr.2:131319806 - 131540895 on Build GRCh38	Loss	TUBA3D WTH3DI POTEI MIR4784 CCDC74A MZT2A LOC150776 LINC01120 NOC2LP2
dgv4079n100	Chr.2:131213210 - 131543555 on Build GRCh38	Loss	TUBA3D POTEE WTH3DI POTEI MIR4784 CCDC74A LOC440910 MZT2A LOC150776 LINC01120 NOC2LP2
esv2670824	Chr.2:130625264 - 131605218 on Build GRCh38	Deletion	POTEE WTH3DI FAM168B MZT2A LINC01120 TUBA3D CYP4F30P GPR148 POTEI AMER3 POTEKP ARHGEF4 MIR4784 POTEJ CCDC74A PLEKHB2 LOC440910 LOC150776 NOC2LP2
esv3893359	Chr.2:131299593 - 131540895 on Build GRCh38	Gain+Loss	TUBA3D WTH3DI POTEI MIR4784 CCDC74A LOC440910 MZT2A LOC150776 LINC01120 NOC2LP2
dgv4075n100	Chr.2:130720375 - 131521740 on Build GRCh38	Gain	POTEE WTH3DI FAM168B MZT2A LINC01120 TUBA3D GPR148 POTEI AMER3 ARHGEF4 MIR4784 PLEKHB2 LOC440910 LOC150776 NOC2LP2
esv3592484	Chr.2:131477920 - 131527155 on Build GRCh38	Gain	TUBA3D POTEI MIR4784 CCDC74A MZT2A LOC150776
nsv428404	Chr.2:131023910 - 131858730 on Build GRCh38	Loss	POTEE WTH3DI FAM168B LINC01087 MZT2A LINC01120 C2orf27B TUBA3D POTEI POTEKP ARHGEF4 MIR4784 C2orf27A CCDC74A PLEKHB2 LOC440910 LOC150776 NOC2LP2 LOC100507460
esv3584079	Chr.2:131350116 - 131523250 on Build GRCh38	Loss	TUBA3D WTH3DI POTEI MIR4784 CCDC74A MZT2A LOC150776 LINC01120 NOC2LP2
nsv1014682	Chr.2:131290833 - 131612296 on Build GRCh38	Loss	TUBA3D WTH3DI POTEI POTEKP MIR4784 CCDC74A LOC440910 MZT2A LOC150776 LINC01120 NOC2LP2
esv3575300	Chr.2:131198972 - 131523250 on Build GRCh38	Gain	TUBA3D POTEE WTH3DI POTEI MIR4784 CCDC74A LOC440910 MZT2A LOC150776 LINC01120 NOC2LP2
nsv1002963	Chr.2:131384835 - 131589090 on Build GRCh38	Gain	TUBA3D POTEI MIR4784 CCDC74A MZT2A LOC150776 LINC01120 NOC2LP2
nsv524021	Chr.2:130724906 - 131553515 on Build GRCh38	Loss	POTEE WTH3DI FAM168B MZT2A LINC01120 TUBA3D GPR148 POTEI AMER3 ARHGEF4 MIR4784 CCDC74A PLEKHB2 LOC440910 LOC150776 NOC2LP2
nsv834376	Chr.2:131426523 - 131595245 on Build GRCh38	Gain	TUBA3D POTEI POTEKP MIR4784 CCDC74A MZT2A LOC150776 NOC2LP2
nsv979124	Chr.2:131461196 - 131549886 on Build GRCh38	Duplication	TUBA3D POTEI MIR4784 CCDC74A MZT2A LOC150776
esv2760576	Chr.2:130634172 - 131521752 on Build GRCh38	Gain+Loss	POTEE WTH3DI FAM168B MZT2A LINC01120 TUBA3D CYP4F30P GPR148 POTEI AMER3 ARHGEF4 MIR4784 POTEJ PLEKHB2 LOC440910 LOC150776 NOC2LP2
dgv4077n100	Chr.2:131182622 - 131543555 on Build GRCh38	Gain	TUBA3D POTEE WTH3DI POTEI MIR4784 CCDC74A LOC440910 MZT2A LOC150776 LINC01120 NOC2LP2
esv2759092	Chr.2:129589265 - 132440430 on Build GRCh38	Gain+Loss	RAB6C-AS1 MZT2A POTEI CCDC74A RAB6C PLEKHB2 POTEE MZT2B LOC389033 PTPN18 LINC01087 CYP4F62P LINC01120 C2orf27B CYP4F30P GPR148 LOC646743 MIR4784 POTEJ C2orf27A NOC2LP2 FAM201B WTH3DI ZNF806 ANKRD30BL CCDC74B IMP4 CCDC115 POTEF NOC2LP1 POTEKP ARHGEF4 LOC101927924 LOC150776 LOC100507460 FAR2P2 FAM168B CFC1 TISP43 TUBA3D MIR663B SMPD4 TUBA3E AMER3 FAR2P1 MED15P9 LOC440910 GPR39 LOC107985778 CFC1B
nsv1008539	Chr.2:131468769 - 131523332 on Build GRCh38	Gain	TUBA3D POTEI MIR4784 CCDC74A MZT2A LOC150776
nsv997248	Chr.2:131390238 - 131985656 on Build GRCh38	Loss	LINC01087 MZT2A LINC01120 C2orf27B TUBA3D POTEI POTEKP MIR4784 C2orf27A CCDC74A LOC150776 NOC2LP2 LOC100507460
esv34704	Chr.2:131323539 - 131678860 on Build GRCh38	Gain	TUBA3D WTH3DI POTEI POTEKP MIR4784 CCDC74A LINC01087 MZT2A LOC150776 LINC01120 NOC2LP2 LOC100507460
esv34412	Chr.2:131197674 - 131493393 on Build GRCh38	Gain	TUBA3D POTEE WTH3DI POTEI MIR4784 LOC440910 MZT2A LOC150776 LINC01120 NOC2LP2

More Information

Additional Information:

For this assay, SNP(s) [rs142365960] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation