Hs03459353_cn

• Gene Symbol: APOD
• Assay Reference Genome Location: Chr.3:195570743 on build GRCh38
• Cytoband: 3q29

Target Gene Details

• Entrez Gene ID: 347
• Gene Name: apolipoprotein D
• Gene Aliases: -
• Location: Chr.3:195568702-195584205 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
APOD	NM_001647.3			NP_001638.1
	AK294523.1	4	1046
	AK312090.1
	BC007402.2			AAH07402.1
	BQ008672.1
	BT019860.1			AAV38663.1
	BT019861.1			AAV38664.1
	BU195270.1
	CR456838.1			CAG33119.1
	CR541773.1			CAG46572.1
	DA892855.1
	J02611.1			AAB59517.1
	S80440.1			AAB35919.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv5016n100	Chr.3:195552380 - 195720039 on Build GRCh38	Gain+Loss	SDHAP2 LOC105374297 LINC00969 APOD MIR570
nsv1001387	Chr.3:195465410 - 195934667 on Build GRCh38	Gain	SDHAP2 MIR6829 LOC105374299 LOC105374297 LINC00969 APOD LOC101929697 TNK2 PPP1R2 MUC4 MUC20 MIR570
dgv5015n100	Chr.3:195532487 - 195751823 on Build GRCh38	Loss	SDHAP2 LOC105374297 LINC00969 APOD PPP1R2 MUC4 MUC20 MIR570
nsv1006229	Chr.3:195350692 - 195747880 on Build GRCh38	Gain	SDHAP2 LOC105374297 LINC00969 APOD ACAP2 PPP1R2 MUC4 MUC20 MIR570
nsv428430	Chr.3:195478549 - 196102555 on Build GRCh38	Gain+Loss	LOC105374299 LINC00969 APOD LOC101929697 TNK2 TFRC MUC4 SDHAP2 MIR6829 LOC105374297 SDHAP1 PPP1R2 LOC105374301 MUC20 MIR570
esv2763776	Chr.3:195514028 - 195775248 on Build GRCh38	Gain+Loss	SDHAP2 LOC105374297 LINC00969 APOD PPP1R2 MUC4 MUC20 MIR570
dgv5014n100	Chr.3:195514016 - 195747880 on Build GRCh38	Gain	SDHAP2 LOC105374297 LINC00969 APOD PPP1R2 MUC4 MUC20 MIR570
esv2759213	Chr.3:195382058 - 196344722 on Build GRCh38	Gain+Loss	LOC105374299 LINC00969 APOD PCYT1A LOC101929697 TNK2 TFRC MUC4 TM4SF19 TCTEX1D2 LINC00885 SDHAP2 ZDHHC19 MIR6829 LOC105374297 TM4SF19-AS1 ACAP2 SDHAP1 SLC51A PPP1R2 LOC105374301 TM4SF19-TCTEX1D2 MUC20 MIR570

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

apolipoprotein

Gene Ontology Categories:

Process(es)

response to reactive oxygen species
angiogenesis
glucose metabolic process
lipid metabolic process
lipid transport
brain development
aging
negative regulation of platelet-derived growth factor receptor signaling pathway
peripheral nervous system axon regeneration
tissue regeneration
negative regulation of protein import into nucleus
response to drug
negative regulation of smooth muscle cell proliferation
response to axon injury
negative regulation of focal adhesion assembly
negative regulation of lipoprotein lipid oxidation
negative regulation of monocyte chemotactic protein-1 production
negative regulation of cytokine production involved in inflammatory response
negative regulation of smooth muscle cell-matrix adhesion
negative regulation of T cell migration

Function(s)

lipid transporter activity
protein binding
cholesterol binding