Hs03476929_cn

• Gene Symbol: CLSTN2
• Assay Reference Genome Location: Chr.3:140505889 on build GRCh38
• Cytoband: 3q23

Target Gene Details

• Entrez Gene ID: 64084
• Gene Name: calsyntenin 2
• Gene Aliases: ALC-GAMMA, CDHR13, CS2, CSTN2, alcagamma
• Location: Chr.3:139935185-140577397 on Build GRCh38
• Assay Gene Location: Within Intron 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CLSTN2	NM_022131.2			NP_071414.2
	XM_017007022.1			XP_016862511.1
	AJ278018.1			CAC14924.1
	AK056411.1
	AK096432.1
	AK315308.1
	AY753303.1			AAV30553.1
	BC103496.1			AAI03497.1
	BC103506.1			AAI03507.1
	BC104485.1			AAI04486.1

Target Gene Details

• Entrez Gene ID: 101927808
• Gene Name: CLSTN2 antisense RNA 1
• Gene Aliases: -
• Location: Chr.3:140505618-140508789 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CLSTN2-AS1	NR_108084.1	2	2415
	AL133103.1	2	2415

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3597960	Chr.3:140441068 - 140556300 on Build GRCh38	Gain	CLSTN2-AS1 CLSTN2
nsv591863	Chr.3:140407225 - 140555600 on Build GRCh38	Gain	CLSTN2-AS1 CLSTN2
esv2759181	Chr.3:140206922 - 140805888 on Build GRCh38	Gain+Loss	CLSTN2-AS1 CLSTN2 TRIM42
esv34489	Chr.3:140290178 - 140750460 on Build GRCh38	Gain	CLSTN2-AS1 CLSTN2 TRIM42
nsv527831	Chr.3:140214124 - 140814981 on Build GRCh38	Gain	CLSTN2-AS1 CLSTN2 TRIM42
esv3597954	Chr.3:140211324 - 140831350 on Build GRCh38	Gain	CLSTN2-AS1 CLSTN2 TRIM42

More Information

Additional Information:

For this assay, SNP(s) [rs80321198] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
positive regulation of synaptic transmission
positive regulation of synapse assembly

Function(s)

calcium ion binding