Hs03478004_cn

• Gene Symbol: APOD
• Assay Reference Genome Location: Chr.3:195572256 on build GRCh38
• Cytoband: 3q29

Target Gene Details

• Entrez Gene ID: 347
• Gene Name: apolipoprotein D
• Gene Aliases: -
• Location: Chr.3:195568702-195584205 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
APOD	NM_001647.3			NP_001638.1
	AK294523.1
	AK312090.1
	BC007402.2			AAH07402.1
	BQ008672.1
	BT019860.1			AAV38663.1
	BT019861.1			AAV38664.1
	BU195270.1
	CR456838.1			CAG33119.1
	CR541773.1			CAG46572.1
	DA892855.1
	J02611.1			AAB59517.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1001387	Chr.3:195465410 - 195934667 on Build GRCh38	Gain	LOC101929697 APOD TNK2 SDHAP2 MIR6829 PPP1R2 MUC4 LOC105374299 LINC00969 MIR570 MUC20 LOC105374297
dgv5016n100	Chr.3:195552380 - 195720039 on Build GRCh38	Gain+Loss	APOD SDHAP2 LINC00969 MIR570 LOC105374297
nsv1006229	Chr.3:195350692 - 195747880 on Build GRCh38	Gain	APOD SDHAP2 PPP1R2 MUC4 LINC00969 MIR570 MUC20 LOC105374297 ACAP2
dgv5015n100	Chr.3:195532487 - 195751823 on Build GRCh38	Loss	APOD SDHAP2 PPP1R2 MUC4 LINC00969 MIR570 MUC20 LOC105374297
nsv428430	Chr.3:195478549 - 196102555 on Build GRCh38	Gain+Loss	APOD SDHAP2 MIR6829 PPP1R2 TFRC LINC00969 MIR570 MUC20 LOC105374297 LOC101929697 TNK2 MUC4 LOC105374299 LOC105374301 SDHAP1
esv2763776	Chr.3:195514028 - 195775248 on Build GRCh38	Gain+Loss	APOD SDHAP2 PPP1R2 MUC4 LINC00969 MIR570 MUC20 LOC105374297
dgv5014n100	Chr.3:195514016 - 195747880 on Build GRCh38	Gain	APOD SDHAP2 PPP1R2 MUC4 LINC00969 MIR570 MUC20 LOC105374297
esv2759213	Chr.3:195382058 - 196344722 on Build GRCh38	Gain+Loss	APOD TCTEX1D2 SDHAP2 TM4SF19 MIR6829 PCYT1A PPP1R2 TFRC LINC00969 MIR570 MUC20 LOC105374297 SLC51A LOC101929697 TNK2 TM4SF19-AS1 MUC4 LOC105374299 LOC105374301 SDHAP1 ZDHHC19 LINC00885 TM4SF19-TCTEX1D2 ACAP2

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

apolipoprotein

Gene Ontology Categories:

Process(es)

response to reactive oxygen species
angiogenesis
glucose metabolic process
lipid metabolic process
lipid transport
brain development
aging
negative regulation of platelet-derived growth factor receptor signaling pathway
peripheral nervous system axon regeneration
tissue regeneration
negative regulation of protein import into nucleus
response to drug
negative regulation of smooth muscle cell proliferation
response to axon injury
negative regulation of focal adhesion assembly
negative regulation of lipoprotein lipid oxidation
negative regulation of monocyte chemotactic protein-1 production
negative regulation of cytokine production involved in inflammatory response
negative regulation of smooth muscle cell-matrix adhesion
negative regulation of T cell migration

Function(s)

lipid transporter activity
protein binding
cholesterol binding