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See other SLC38A3 CNV Assays ›
Gene Symbol
SLC38A3
Assay Reference Genome
Location

Chr.3:50206946 on build GRCh38
Cytoband
3p21.31
Assay ID Hs03493765_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 10991

Gene Name:

 solute carrier family 38 member 3

Gene Aliases:

 G17, NAT1, SN1, SNAT3

Location:

 Chr.3:50205246-50220979 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SLC38A3 NM_006841.5 NP_006832.1
AF244548.1 AAG15313.1
AK293801.1
AK299677.1
AK313461.1
BC042875.1 AAH42875.1
BP362985.1
BX537382.1 CAD97624.1
U49082.1 AAB47236.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv523560 Chr.3:50134964 - 50314769 on Build GRCh38 Loss GNAI2 SEMA3F-AS1 IFRD2 MIR5787 MIR566 NAT6 HYAL3 MIR6872 HYAL1 LSMEM2 SLC38A3 SEMA3F SEMA3B-AS1 LOC107986035 GNAT1 SEMA3B
esv2759148 Chr.3:50161045 - 50333946 on Build GRCh38 Loss TUSC2 GNAI2 RASSF1 IFRD2 MIR5787 HYAL2 MIR566 NAT6 HYAL3 MIR6872 HYAL1 LSMEM2 SLC38A3 SEMA3F SEMA3B-AS1 GNAT1 SEMA3B
dgv602n27 Chr.3:50140578 - 50287241 on Build GRCh38 Loss LSMEM2 GNAI2 SLC38A3 SEMA3F-AS1 SEMA3F SEMA3B-AS1 MIR5787 LOC107986035 MIR566 GNAT1 MIR6872 SEMA3B
dgv8317n54 Chr.3:50206077 - 50383123 on Build GRCh38 Loss TUSC2 ZMYND10 GNAI2 RASSF1 IFRD2 MIR5787 HYAL2 NAT6 HYAL3 MIR6872 HYAL1 CYB561D2 LSMEM2 TMEM115 SLC38A3 CACNA2D2 SEMA3B-AS1 NPRL2 RASSF1-AS1 SEMA3B
nsv515986 Chr.3:50066874 - 50254353 on Build GRCh38 Loss RBM5-AS1 GNAI2 SLC38A3 SEMA3F-AS1 RBM6 SEMA3F MIR5787 LOC107986035 MIR566 GNAT1 RBM5
dgv8316n54 Chr.3:50115923 - 50299991 on Build GRCh38 Loss GNAI2 SEMA3F-AS1 IFRD2 MIR5787 MIR566 NAT6 HYAL3 MIR6872 HYAL1 LSMEM2 SLC38A3 SEMA3F SEMA3B-AS1 LOC107986035 GNAT1 RBM5 SEMA3B
nsv834692 Chr.3:50161052 - 50356033 on Build GRCh38 Loss TUSC2 ZMYND10 GNAI2 RASSF1 IFRD2 MIR5787 HYAL2 MIR566 NAT6 HYAL3 MIR6872 HYAL1 CYB561D2 LSMEM2 TMEM115 SLC38A3 SEMA3F SEMA3B-AS1 NPRL2 GNAT1 RASSF1-AS1 SEMA3B
nsv834690 Chr.3:50064402 - 50263192 on Build GRCh38 Loss RBM5-AS1 GNAI2 SLC38A3 SEMA3F-AS1 RBM6 SEMA3F MIR5787 LOC107986035 MIR566 GNAT1 RBM5
nsv523662 Chr.3:50107518 - 50547568 on Build GRCh38 Loss TUSC2 IFRD2 HYAL2 MIR566 HYAL3 HYAL1 CYB561D2 TMEM115 SEMA3B-AS1 GNAT1 RASSF1-AS1 SEMA3B ZMYND10 GNAI2 RASSF1 SEMA3F-AS1 MIR5787 NAT6 MIR6872 LSMEM2 SLC38A3 SEMA3F CACNA2D2 NPRL2 LOC107986035 RBM5
nsv470561 Chr.3:50121341 - 50547568 on Build GRCh38 Loss TUSC2 IFRD2 HYAL2 MIR566 HYAL3 HYAL1 CYB561D2 TMEM115 SEMA3B-AS1 GNAT1 RASSF1-AS1 SEMA3B ZMYND10 GNAI2 RASSF1 SEMA3F-AS1 MIR5787 NAT6 MIR6872 LSMEM2 SLC38A3 SEMA3F CACNA2D2 NPRL2 LOC107986035
nsv954855 Chr.3:50152468 - 50439169 on Build GRCh38 Deletion TUSC2 IFRD2 HYAL2 MIR566 HYAL3 HYAL1 CYB561D2 TMEM115 SEMA3B-AS1 GNAT1 RASSF1-AS1 SEMA3B ZMYND10 GNAI2 RASSF1 SEMA3F-AS1 MIR5787 NAT6 MIR6872 LSMEM2 SLC38A3 SEMA3F CACNA2D2 NPRL2 LOC107986035

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More Information


Additional Information:

For this assay, SNP(s) [rs79445472] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

amino acid transporter

Gene Ontology Categories:

Function(s) Process(es)


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