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Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32177736 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03583878_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_032741.4 NP_116130.2
XM_005248806.2 XP_005248863.1
XM_011514234.1 1 101 XP_011512536.1
BC002402.2 AAH02402.1
BC003007.1 AAH03007.1
DB118884.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv24778 Chr.6:32177265 - 32180330 on Build GRCh38 Loss RNF5 AGPAT1 MIR6833
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss GPSM3 PPT2-EGFL8 NOTCH4 RNF5 LOC100507547 EGFL8 AGER PPT2 AGPAT1 FKBPL MIR6833 ATF6B TNXB PRRT1 PBX2 MIR6721
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss NOTCH4 C2-AS1 PPT2 AGPAT1 CYP21A1P TNXA MIR6833 HLA-DRA C4B LOC101929163 SKIV2L SLC44A4 NEU1 STK19 HLA-DRB1 RNF5 EGFL8 AGER BTNL2 DXO ZBTB12 HSPA1B ATF6B TNXB PRRT1 NELFE SNORD48 PPT2-EGFL8 HCG23 C4A HLA-DQA1 LOC100507547 CFB HLA-DQB1 HLA-DRB6 SNORD52 MIR6721 GPSM3 MIR1236 HSPA1A C2 C6orf10 FKBPL C6orf48 CYP21A2 HLA-DQB1-AS1 PBX2 EHMT2 HLA-DRB5
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss PPT2-EGFL8 NOTCH4 HCG23 C4A HLA-DQA1 LOC100507547 PPT2 HLA-DQA2 AGPAT1 CYP21A1P HLA-DQB1 HLA-DRB6 TNXA MIR6833 HLA-DRA C4B LOC101929163 MIR6721 GPSM3 HLA-DRB1 RNF5 EGFL8 AGER BTNL2 C6orf10 FKBPL ATF6B TNXB CYP21A2 PRRT1 HLA-DQB1-AS1 PBX2 HLA-DQB2 MIR3135B HLA-DRB5
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss PPT2-EGFL8 NOTCH4 C4A LOC100507547 C2-AS1 PPT2 CFB AGPAT1 CYP21A1P TNXA MIR6833 C4B SKIV2L MIR6721 GPSM3 STK19 MIR1236 RNF5 EGFL8 AGER C2 DXO FKBPL ATF6B TNXB CYP21A2 PRRT1 PBX2 NELFE
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion NOTCH4 C6orf25 C2-AS1 HCP5 PPT2 MCCD1 ATP6V1G2-DDX39B GPANK1 AGPAT1 CYP21A1P TNXA MIR6833 HLA-DRA MIR6832 C4B TNF LOC101929163 SKIV2L NFKBIL1 LY6G6C HCG26 CSNK2B SLC44A4 NEU1 AIF1 DDAH2 SNORA38 ABHD16A STK19 HLA-DRB1 RNF5 SAPCD1-AS1 C6orf47 EGFL8 AGER BTNL2 DXO VWA7 ZBTB12 ATP6V1G2 HSPA1B LTA LY6G6D ATF6B TNXB PRRT1 SNORD84 NELFE SNORD48 PPT2-EGFL8 HCG23 C4A DDX39B NCR3 LOC100507547 PRRC2A MICB MIR4646 LY6G5C CFB LST1 HLA-DRB6 LSM2 SNORD52 SNORD117 MIR6721 CLIC1 DDX39B-AS1 VARS LOC102725068 HSPA1L LY6G6F LOC100287329 BAG6 GPSM3 MSH5-SAPCD1 MIR1236 HSPA1A C2 C6orf10 FKBPL C6orf48 CYP21A2 MSH5 PBX2 SAPCD1 EHMT2 LY6G5B APOM LTB LY6G6E HLA-DRB5
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SLC39A7 HCP5 PPT2 MCCD1 ATP6V1G2-DDX39B HLA-DQA2 GPANK1 CYP21A1P TNXA PPP1R2P1 MIR6833 HLA-DRA C4B LOC101929163 NFKBIL1 DAXX CSNK2B SLC44A4 NEU1 AIF1 SNORA38 HLA-DPB2 ABHD16A SAPCD1-AS1 EGFL8 AGER PHF1 ATP6V1G2 LTA TNXB PRRT1 SNORD84 B3GALT4 RING1 HLA-DMA PPT2-EGFL8 HCG23 C4A DDX39B NCR3 LOC100507547 PRRC2A MICB CFB ZBTB9 MIR6834 MIR6721 MIR6873 CLIC1 TAPBP BAG6 C2 C6orf10 FKBPL HLA-DPB1 C6orf48 KIFC1 MSH5 RXRB PFDN6 TAP2 LY6G6E NOTCH4 C6orf25 C2-AS1 TAP1 AGPAT1 MIR6832 TNF SKIV2L WDR46 HCG24 LY6G6C HCG26 BRD2 COL11A2 RPS18 DDAH2 HLA-DOB STK19 HLA-DRB1 RNF5 C6orf47 BTNL2 PSMB8 DXO VWA7 ZBTB12 HSPA1B RGL2 LY6G6D ATF6B NELFE HLA-DQB2 HLA-DMB PSMB9 SNORD48 ZBTB22 HLA-DQA1 SYNGAP1 MIR4646 LY6G5C LST1 HLA-DQB1 HLA-DRB6 LSM2 SNORD52 HCG25 SNORD117 DDX39B-AS1 VARS LOC102725068 HSPA1L LY6G6F MIR219A1 LOC100287329 GPSM3 HLA-DOA MSH5-SAPCD1 MIR5004 MIR1236 HSPA1A HSD17B8 CYP21A2 PSMB8-AS1 HLA-DQB1-AS1 HLA-DPA1 PBX2 SAPCD1 LOC100294145 VPS52 EHMT2 LY6G5B CUTA APOM LTB MIR3135B HLA-DRB5
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss GPSM3 PPT2-EGFL8 NOTCH4 RNF5 LOC100507547 EGFL8 AGER PPT2 AGPAT1 FKBPL MIR6833 ATF6B TNXB PRRT1 PBX2 MIR6721
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SLC39A7 HCP5 PPT2 MCCD1 ATP6V1G2-DDX39B HLA-DQA2 GPANK1 CYP21A1P TNXA PPP1R2P1 MIR6833 HLA-DRA C4B LOC101929163 NFKBIL1 DAXX CSNK2B SLC44A4 NEU1 AIF1 SNORA38 HLA-DPB2 ABHD16A SAPCD1-AS1 EGFL8 AGER PHF1 ATP6V1G2 LTA TNXB PRRT1 SNORD84 B3GALT4 RING1 HLA-DMA PPT2-EGFL8 HCG23 C4A DDX39B NCR3 LOC100507547 PRRC2A MICB CFB ZBTB9 MIR6834 MIR6721 MIR6873 CLIC1 TAPBP BAG6 C2 C6orf10 FKBPL HLA-DPB1 C6orf48 KIFC1 MSH5 RXRB PFDN6 TAP2 LY6G6E NOTCH4 C6orf25 C2-AS1 TAP1 AGPAT1 MIR6832 TNF SKIV2L WDR46 HCG24 LY6G6C HCG26 BRD2 COL11A2 RPS18 DDAH2 HLA-DOB STK19 HLA-DRB1 RNF5 C6orf47 BTNL2 PSMB8 DXO VWA7 ZBTB12 HSPA1B RGL2 LY6G6D ATF6B NELFE HLA-DQB2 HLA-DMB PSMB9 SNORD48 ZBTB22 HLA-DQA1 SYNGAP1 MIR4646 LY6G5C LST1 HLA-DQB1 HLA-DRB6 LSM2 SNORD52 HCG25 SNORD117 DDX39B-AS1 VARS LOC102725068 HSPA1L LY6G6F MIR219A1 LOC100287329 GPSM3 HLA-DOA MSH5-SAPCD1 MIR5004 MIR1236 HSPA1A HSD17B8 CYP21A2 PSMB8-AS1 HLA-DQB1-AS1 HLA-DPA1 PBX2 SAPCD1 LOC100294145 VPS52 EHMT2 LY6G5B CUTA APOM LTB MIR3135B HLA-DRB5
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss NOTCH4 C6orf25 C2-AS1 HCP5 PPT2 MCCD1 ATP6V1G2-DDX39B GPANK1 AGPAT1 CYP21A1P TNXA MIR6833 HLA-DRA MIR6832 C4B TNF LOC101929163 SKIV2L NFKBIL1 LY6G6C HCG26 CSNK2B SLC44A4 NEU1 AIF1 DDAH2 MICA SNORA38 ABHD16A STK19 MIR6891 RNF5 SAPCD1-AS1 C6orf47 EGFL8 AGER BTNL2 DXO VWA7 ZBTB12 ATP6V1G2 HSPA1B LTA LY6G6D ATF6B TNXB PRRT1 SNORD84 NELFE HLA-B SNORD48 PPT2-EGFL8 HCG23 C4A DDX39B NCR3 LOC100507547 PRRC2A MICB MIR4646 LY6G5C CFB LST1 LSM2 SNORD52 SNORD117 MIR6721 CLIC1 DDX39B-AS1 VARS LOC102725068 HSPA1L LY6G6F LOC100287329 BAG6 GPSM3 MSH5-SAPCD1 MIR1236 HSPA1A C2 C6orf10 FKBPL C6orf48 CYP21A2 MSH5 PBX2 SAPCD1 EHMT2 LY6G5B APOM LTB LY6G6E

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