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Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32177192 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03585877_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_032741.4 NP_116130.2
XM_005248806.2 XP_005248863.1
XM_011514234.1 XP_011512536.1
AK056346.1 1 151
BC002402.2 AAH02402.1
BC003007.1 AAH03007.1
DB118884.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv24778 Chr.6:32177265 - 32180330 on Build GRCh38 Loss MIR6833 RNF5 AGPAT1
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss MIR6833 GPSM3 PRRT1 NOTCH4 FKBPL RNF5 LOC100507547 ATF6B TNXB PPT2-EGFL8 AGER PPT2 PBX2 MIR6721 AGPAT1 EGFL8
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss MIR6833 FKBPL SLC44A4 CYP21A2 PPT2-EGFL8 HLA-DRB6 PPT2 NEU1 PBX2 HCG23 AGPAT1 NOTCH4 HLA-DRA C4A CFB RNF5 LOC100507547 ATF6B SNORD52 AGER HSPA1A HSPA1B STK19 GPSM3 PRRT1 HLA-DQB1 NELFE EHMT2 C6orf48 TNXB HLA-DRB5 DXO C2 HLA-DQA1 C2-AS1 C6orf10 MIR6721 EGFL8 BTNL2 MIR1236 ZBTB12 C4B TNXA SKIV2L HLA-DQB1-AS1 HLA-DRB1 SNORD48 CYP21A1P LOC101929163
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss MIR6833 GPSM3 PRRT1 HLA-DQB1 HLA-DQB2 FKBPL MIR3135B TNXB HLA-DRB5 CYP21A2 PPT2-EGFL8 HLA-DRB6 PPT2 HLA-DQA1 HLA-DQA2 PBX2 C6orf10 MIR6721 HCG23 AGPAT1 EGFL8 NOTCH4 BTNL2 HLA-DRA C4A RNF5 LOC100507547 ATF6B C4B TNXA AGER HLA-DQB1-AS1 HLA-DRB1 CYP21A1P LOC101929163
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss MIR6833 STK19 GPSM3 PRRT1 FKBPL NELFE TNXB DXO CYP21A2 PPT2-EGFL8 C2 PPT2 C2-AS1 PBX2 MIR6721 AGPAT1 EGFL8 NOTCH4 MIR1236 C4A CFB RNF5 LOC100507547 ATF6B C4B TNXA AGER SKIV2L CYP21A1P
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion HSPA1L APOM MIR6833 LY6G6C FKBPL SLC44A4 CYP21A2 HCP5 C6orf47 LY6G6D PPT2-EGFL8 BAG6 HLA-DRB6 PPT2 ATP6V1G2 NEU1 PBX2 MIR4646 CSNK2B LY6G5B HCG23 AGPAT1 C6orf25 LOC102725068 VARS DDAH2 LY6G5C NOTCH4 PRRC2A SNORA38 HLA-DRA C4A CFB RNF5 LOC100507547 ATF6B AIF1 SNORD52 LY6G6F AGER MSH5 HSPA1A HSPA1B NCR3 MICB SNORD117 GPANK1 DDX39B-AS1 MIR6832 STK19 GPSM3 VWA7 PRRT1 NELFE EHMT2 LTA C6orf48 TNXB HLA-DRB5 LOC100287329 DXO LST1 LSM2 C2 HCG26 C2-AS1 C6orf10 MIR6721 MCCD1 EGFL8 SAPCD1-AS1 BTNL2 TNF MIR1236 MSH5-SAPCD1 ZBTB12 ABHD16A LY6G6E NFKBIL1 LTB DDX39B C4B TNXA CLIC1 SKIV2L SNORD84 HLA-DRB1 SNORD48 SAPCD1 CYP21A1P LOC101929163 ATP6V1G2-DDX39B
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion APOM MIR6833 HSD17B8 B3GALT4 FKBPL SLC44A4 HLA-DPB1 PSMB8 HCP5 C6orf47 LY6G6D MIR219A1 BAG6 RPS18 PPT2 HLA-DQA2 NEU1 CSNK2B LY6G5B HCG23 AGPAT1 LOC102725068 LY6G5C PRRC2A SNORA38 C4A COL11A2 MIR6873 TAP2 LY6G6F AGER WDR46 HSPA1A HLA-DOA NCR3 MIR6834 HLA-DMB GPANK1 MIR6832 GPSM3 PRRT1 HLA-DQB1 SYNGAP1 EHMT2 MIR3135B RXRB C6orf48 TNXB HLA-DRB5 LST1 C2 HLA-DQA1 C2-AS1 RGL2 MIR6721 VPS52 EGFL8 SLC39A7 DAXX TNF MIR1236 MSH5-SAPCD1 ZBTB12 ABHD16A RING1 PSMB8-AS1 NFKBIL1 LTB PSMB9 C4B CUTA HLA-DPA1 SKIV2L HLA-DQB1-AS1 HLA-DOB HLA-DRB1 SNORD48 ZBTB9 CYP21A1P HSPA1L LY6G6C HLA-DQB2 TAPBP CYP21A2 PPT2-EGFL8 KIFC1 HLA-DRB6 ATP6V1G2 PBX2 MIR4646 ZBTB22 C6orf25 VARS DDAH2 MIR5004 NOTCH4 HLA-DRA CFB RNF5 LOC100507547 ATF6B AIF1 SNORD52 MSH5 HSPA1B PHF1 HLA-DMA MICB BRD2 SNORD117 DDX39B-AS1 STK19 VWA7 NELFE LTA TAP1 LOC100287329 DXO LSM2 HCG24 PPP1R2P1 HCG26 C6orf10 MCCD1 HCG25 PFDN6 SAPCD1-AS1 BTNL2 LY6G6E LOC100294145 DDX39B HLA-DPB2 TNXA CLIC1 SNORD84 SAPCD1 LOC101929163 ATP6V1G2-DDX39B
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss MIR6833 GPSM3 PRRT1 NOTCH4 FKBPL RNF5 LOC100507547 ATF6B TNXB PPT2-EGFL8 AGER PPT2 PBX2 MIR6721 AGPAT1 EGFL8
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion APOM MIR6833 HSD17B8 B3GALT4 FKBPL SLC44A4 HLA-DPB1 PSMB8 HCP5 C6orf47 LY6G6D MIR219A1 BAG6 RPS18 PPT2 HLA-DQA2 NEU1 CSNK2B LY6G5B HCG23 AGPAT1 LOC102725068 LY6G5C PRRC2A SNORA38 C4A COL11A2 MIR6873 TAP2 LY6G6F AGER WDR46 HSPA1A HLA-DOA NCR3 MIR6834 HLA-DMB GPANK1 MIR6832 GPSM3 PRRT1 HLA-DQB1 SYNGAP1 EHMT2 MIR3135B RXRB C6orf48 TNXB HLA-DRB5 LST1 C2 HLA-DQA1 C2-AS1 RGL2 MIR6721 VPS52 EGFL8 SLC39A7 DAXX TNF MIR1236 MSH5-SAPCD1 ZBTB12 ABHD16A RING1 PSMB8-AS1 NFKBIL1 LTB PSMB9 C4B CUTA HLA-DPA1 SKIV2L HLA-DQB1-AS1 HLA-DOB HLA-DRB1 SNORD48 ZBTB9 CYP21A1P HSPA1L LY6G6C HLA-DQB2 TAPBP CYP21A2 PPT2-EGFL8 KIFC1 HLA-DRB6 ATP6V1G2 PBX2 MIR4646 ZBTB22 C6orf25 VARS DDAH2 MIR5004 NOTCH4 HLA-DRA CFB RNF5 LOC100507547 ATF6B AIF1 SNORD52 MSH5 HSPA1B PHF1 HLA-DMA MICB BRD2 SNORD117 DDX39B-AS1 STK19 VWA7 NELFE LTA TAP1 LOC100287329 DXO LSM2 HCG24 PPP1R2P1 HCG26 C6orf10 MCCD1 HCG25 PFDN6 SAPCD1-AS1 BTNL2 LY6G6E LOC100294145 DDX39B HLA-DPB2 TNXA CLIC1 SNORD84 SAPCD1 LOC101929163 ATP6V1G2-DDX39B
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss HSPA1L APOM MIR6833 LY6G6C FKBPL SLC44A4 MIR6891 CYP21A2 HCP5 C6orf47 LY6G6D PPT2-EGFL8 BAG6 HLA-B PPT2 ATP6V1G2 NEU1 PBX2 MIR4646 CSNK2B LY6G5B HCG23 AGPAT1 C6orf25 LOC102725068 VARS DDAH2 LY6G5C NOTCH4 PRRC2A SNORA38 HLA-DRA MICA C4A CFB RNF5 LOC100507547 ATF6B AIF1 SNORD52 LY6G6F AGER MSH5 HSPA1A HSPA1B NCR3 MICB SNORD117 GPANK1 DDX39B-AS1 MIR6832 STK19 GPSM3 VWA7 PRRT1 NELFE EHMT2 LTA C6orf48 TNXB LOC100287329 DXO LST1 LSM2 C2 HCG26 C2-AS1 C6orf10 MIR6721 MCCD1 EGFL8 SAPCD1-AS1 BTNL2 TNF MIR1236 MSH5-SAPCD1 ZBTB12 ABHD16A LY6G6E NFKBIL1 LTB DDX39B C4B TNXA CLIC1 SKIV2L SNORD84 SNORD48 SAPCD1 CYP21A1P LOC101929163 ATP6V1G2-DDX39B

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