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Gene Symbol
CCHCR1
Assay Reference Genome
Location

Chr.6:31148253 on build GRCh38
Cytoband
6p21.33
Assay ID Hs03587262_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54535

Gene Name:

 coiled-coil alpha-helical rod protein 1

Gene Aliases:

 C6orf18, HCR, SBP

Location:

 Chr.6:31142439-31158238 on Build GRCh38

Assay Gene Location:

 Within Intron 12
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CCHCR1 NM_001105563.1 NP_001099033.1
NM_001105564.1 NP_001099034.1
NM_019052.3 NP_061925.2
XM_011514702.2 XP_011513004.1
XM_011514703.1 XP_011513005.1
XM_011514704.2 XP_011513006.1
XM_011514705.1 XP_011513007.1
XM_017010961.1 XP_016866450.1
XM_017010962.1 XP_016866451.1
XM_017010963.1 XP_016866452.1
XM_017010964.1 XP_016866453.1
XM_017010965.1 XP_016866454.1
XM_017010966.1 XP_016866455.1
XM_017010967.1 XP_016866456.1
XM_017010968.1 XP_016866457.1
XM_017010969.1 XP_016866458.1
XM_017010970.1 XP_016866459.1
AA356205.1
AB029331.1 BAA81890.1
AB112474.1 BAD05130.1
AB112475.1 BAD05131.1
AF216493.1 AAF74221.1
AK000204.1 BAA91007.1
AK000217.1 BAA91016.1
AK000533.1 BAA91236.1
AK289446.1
AK295494.1
AK310626.1
AY029160.1 AAK55759.1
BC110534.1 AAI10535.1
BC110535.1 AAI10536.1
CR457227.1 CAG33508.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv525933 Chr.6:31113428 - 31174468 on Build GRCh38 Loss CCHCR1 TCF19 PSORS1C1 CDSN PSORS1C3 POU5F1 PSORS1C2
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion TRIM39 OR12D3 TRIM39-RPP21 MIR6891 HLA-F HCG8 LOC105375014 GABBR1 MUC22 ABCF1 ZNRD1ASP OR2H1 ATAT1 LINC00243 HCG22 MAS1L MDC1-AS1 HLA-K DHX16 TRIM26 HLA-B GTF2H4 HLA-J C6orf136 VARS2 HLA-G HCG9 POU5F1 PSORS1C2 HCG27 ZNRD1 OR5V1 MIR877 OR12D2 HCG4 HCG18 PPP1R11 LINC01015 CCHCR1 TUBB HLA-H TRIM31-AS1 DDR1 TRIM15 GNL1 OR2J2 OR14J1 PRR3 IFITM4P NRM RNF39 HCG17 SFTA2 HLA-A ZFP57 MDC1 TCF19 TRIM40 IER3 PSORS1C3 MICA PPP1R18 MRPS18B OR10C1 TRIM10 DPCR1 UBD HLA-F-AS1 OR2H2 HLA-C SNORD32B HLA-E MOG HCG20 OR11A1 MUC21 PSORS1C1 CDSN MIR4640 FLOT1 LOC101929006 LOC554223 TRIM31 RPP21 HLA-L C6orf15 HCG4B PPP1R10
nsv601481 Chr.6:30454855 - 31316476 on Build GRCh38 Loss NRM SFTA2 LOC105375014 MUC22 ABCF1 MDC1 TCF19 ATAT1 LINC00243 IER3 PSORS1C3 HCG22 PPP1R18 MRPS18B MDC1-AS1 DHX16 GTF2H4 C6orf136 DPCR1 VARS2 POU5F1 PSORS1C2 HLA-C HCG27 HLA-E HCG20 MIR877 CCHCR1 TUBB MUC21 PSORS1C1 CDSN MIR4640 FLOT1 DDR1 GNL1 PRR3 C6orf15 PPP1R10
nsv428140 Chr.6:31060513 - 31494329 on Build GRCh38 Gain+Loss HLA-C HCG27 MIR6891 HCP5 HCG26 CCHCR1 TCF19 PSORS1C1 CDSN PSORS1C3 MICA LOC102725068 HLA-B C6orf15 POU5F1 PSORS1C2
nsv524061 Chr.6:31139310 - 31166166 on Build GRCh38 Loss CCHCR1 TCF19 PSORS1C1 POU5F1 PSORS1C2
esv33724 Chr.6:31146696 - 31150796 on Build GRCh38 Gain CCHCR1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion TRIM39 OR12D3 TRIM39-RPP21 HLA-F TRIM27 HCG8 LOC105375014 GABBR1 HCG14 MUC22 ABCF1 OR2B3 ZNRD1ASP OR2H1 ATAT1 LINC00243 HCG22 MAS1L MDC1-AS1 HLA-K DHX16 TRIM26 GTF2H4 HLA-J C6orf136 VARS2 HLA-G HCG9 POU5F1 PSORS1C2 HCG27 LINC01556 ZNRD1 OR5V1 MIR877 OR12D2 HCG4 HCG18 PPP1R11 LINC01015 CCHCR1 TUBB HLA-H TRIM31-AS1 DDR1 TRIM15 GNL1 OR2J2 OR14J1 PRR3 IFITM4P HCG16 NRM RNF39 HCG17 SFTA2 HLA-A ZFP57 MDC1 TCF19 TRIM40 IER3 PSORS1C3 LOC100129636 PPP1R18 OR2W1 MRPS18B OR10C1 TRIM10 DPCR1 UBD HLA-F-AS1 OR2H2 LINC00533 SNORD32B HLA-E MOG HCG20 OR11A1 MUC21 PSORS1C1 CDSN LINC01623 MIR4640 FLOT1 LOC101929006 LOC554223 TRIM31 RPP21 HLA-L C6orf15 HCG4B PPP1R10 ZNF311 OR2J3
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion TRIM39 TRIM39-RPP21 HLA-F HCG8 LOC105375014 MUC22 ABCF1 ZNRD1ASP ATAT1 LINC00243 HCG22 MDC1-AS1 HLA-K DHX16 TRIM26 GTF2H4 HLA-J C6orf136 VARS2 HLA-G HCG9 POU5F1 PSORS1C2 HCG27 ZNRD1 MIR877 HCG4 HCG18 PPP1R11 CCHCR1 TUBB HLA-H TRIM31-AS1 DDR1 TRIM15 GNL1 PRR3 IFITM4P NRM RNF39 HCG17 SFTA2 HLA-A MDC1 TCF19 TRIM40 IER3 PSORS1C3 PPP1R18 MRPS18B TRIM10 DPCR1 HLA-F-AS1 HLA-C HLA-E HCG20 MUC21 PSORS1C1 CDSN MIR4640 FLOT1 LOC554223 TRIM31 RPP21 HLA-L C6orf15 HCG4B PPP1R10
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss TRIM39 TRIM39-RPP21 HCG8 LOC105375014 MUC22 ABCF1 ZNRD1ASP ATAT1 LINC00243 HCG22 MDC1-AS1 HLA-K DHX16 TRIM26 GTF2H4 HLA-J C6orf136 VARS2 HCG9 POU5F1 PSORS1C2 HCG27 ZNRD1 MIR877 HCG18 PPP1R11 CCHCR1 TUBB HLA-H TRIM31-AS1 DDR1 TRIM15 GNL1 PRR3 NRM RNF39 HCG17 SFTA2 HLA-A MDC1 TCF19 TRIM40 IER3 PSORS1C3 PPP1R18 MRPS18B TRIM10 DPCR1 HLA-C HLA-E HCG20 MUC21 PSORS1C1 CDSN MIR4640 FLOT1 TRIM31 RPP21 HLA-L C6orf15 HCG4B PPP1R10
esv2731791 Chr.6:30404802 - 31346410 on Build GRCh38 Deletion NRM SFTA2 LOC105375014 MUC22 ABCF1 MDC1 TCF19 ATAT1 LINC00243 IER3 PSORS1C3 HCG22 PPP1R18 MRPS18B MDC1-AS1 DHX16 GTF2H4 C6orf136 DPCR1 VARS2 POU5F1 PSORS1C2 HLA-C HCG27 HLA-E HCG20 MIR877 CCHCR1 TUBB MUC21 PSORS1C1 CDSN MIR4640 FLOT1 DDR1 GNL1 PRR3 C6orf15 PPP1R10
dgv1174e214 Chr.6:31139843 - 31176217 on Build GRCh38 Gain CCHCR1 TCF19 PSORS1C1 PSORS1C3 POU5F1
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication TRIM39 TRIM39-RPP21 MIR6891 HCG8 LOC105375014 MUC22 ABCF1 ZNRD1ASP ATAT1 LINC00243 HCG22 MDC1-AS1 DHX16 TRIM26 HLA-B GTF2H4 HLA-J C6orf136 VARS2 POU5F1 PSORS1C2 HCG27 ZNRD1 MIR877 HCG18 PPP1R11 CCHCR1 TUBB TRIM31-AS1 DDR1 TRIM15 GNL1 PRR3 NRM RNF39 HCG17 SFTA2 MDC1 TCF19 TRIM40 IER3 PSORS1C3 MICA PPP1R18 MRPS18B LOC102725068 TRIM10 DPCR1 HLA-C HLA-E HCG20 HCP5 HCG26 MUC21 PSORS1C1 CDSN MIR4640 FLOT1 TRIM31 RPP21 HLA-L C6orf15 PPP1R10

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s)


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