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See other ATP6V1G2-DDX39B CNV Assays ›
Gene Symbol
ATP6V1G2-DDX39B
Assay Reference Genome
Location

Chr.6:31533292 on build GRCh38
Cytoband
6p21.33
Assay ID Hs03593688_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 100532737

Gene Name:

 ATP6V1G2-DDX39B readthrough (NMD candidate)

Gene Aliases:

 -

Location:

 Chr.6:31530219-31546848 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATP6V1G2-DDX39B NR_037853.1

Target Gene Details

Entrez Gene ID:

 7919

Gene Name:

 DEAD-box helicase 39B

Gene Aliases:

 BAT1, D6S81E, UAP56

Location:

 Chr.6:31530219-31542475 on Build GRCh38

Assay Gene Location:

 Within Intron 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
DDX39B NM_004640.6 NP_004631.1
NM_080598.5 NP_542165.1
NR_037852.1
AK127767.1 5 4281
AK222912.1 BAD96632.1
AK298194.1
BC000361.2 AAH00361.1
BC013006.2 AAH13006.1
BT009909.1 AAP88911.1
Z37166.1 CAA85523.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759414 Chr.6:31060513 - 31574531 on Build GRCh38 Gain+Loss PSORS1C1 MICA MICB ATP6V1G2 HCP5 ATP6V1G2-DDX39B CCHCR1 CDSN DDX39B-AS1 C6orf15 TCF19 LOC102725068 SNORD84 LTA LOC100287329 HLA-C MCCD1 MIR6891 PSORS1C2 HLA-B HCG27 DDX39B HCG26 SNORD117 NFKBIL1 PSORS1C3 POU5F1
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion GPSM3 VARS MICB PRRC2A LSM2 ATP6V1G2 PBX2 HCP5 C6orf10 APOM ATP6V1G2-DDX39B LY6G5C TNXB SAPCD1-AS1 HSPA1L PPT2 DDAH2 BAG6 MSH5-SAPCD1 SNORD84 LOC100507547 MIR6721 NEU1 CFB C4A LY6G6D CLIC1 MCCD1 FKBPL HLA-DRA CSNK2B CYP21A2 LOC101929163 HSPA1A SNORD48 AGER LTB SNORD117 TNF NFKBIL1 C2 ABHD16A LY6G6E AIF1 ATF6B HSPA1B TNXA DXO EGFL8 LY6G6F VWA7 LST1 CYP21A1P C2-AS1 SKIV2L MIR6833 AGPAT1 NCR3 SAPCD1 GPANK1 LY6G6C DDX39B-AS1 PRRT1 ZBTB12 C6orf47 SLC44A4 LOC102725068 LTA BTNL2 LY6G5B LOC100287329 NELFE STK19 RNF5 MIR4646 HLA-DRB5 NOTCH4 C6orf48 SNORA38 PPT2-EGFL8 HLA-DRB6 MIR6832 HLA-DRB1 C4B DDX39B SNORD52 HCG26 MSH5 EHMT2 MIR1236 C6orf25 HCG23
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss VARS MICB PRRC2A LSM2 ATP6V1G2 HCP5 APOM ATP6V1G2-DDX39B LY6G5C TNXB SAPCD1-AS1 HSPA1L DDAH2 BAG6 MSH5-SAPCD1 SNORD84 NEU1 CFB C4A LY6G6D CLIC1 MCCD1 CSNK2B HLA-B CYP21A2 HSPA1A SNORD48 LTB SNORD117 TNF NFKBIL1 C2 ABHD16A LY6G6E AIF1 MICA HSPA1B TNXA DXO LY6G6F VWA7 LST1 CYP21A1P C2-AS1 SKIV2L NCR3 SAPCD1 GPANK1 LY6G6C DDX39B-AS1 ZBTB12 C6orf47 SLC44A4 LOC102725068 LTA LY6G5B LOC100287329 NELFE STK19 MIR6891 MIR4646 C6orf48 SNORA38 MIR6832 C4B DDX39B SNORD52 HCG26 MSH5 EHMT2 MIR1236 C6orf25
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion HLA-DOA HCP5 HCG25 HLA-DQB1 VPS52 WDR46 C6orf10 APOM LY6G5C SAPCD1-AS1 HSPA1L PPT2 PSMB9 COL11A2 ZBTB22 SNORD84 LOC100507547 MIR6721 C4A FKBPL CYP21A2 HLA-DPB1 HSPA1A LTB SNORD117 TNF C2 RPS18 HSD17B8 HCG24 ATF6B HSPA1B TNXA LY6G6F MIR5004 LST1 MIR3135B C2-AS1 SKIV2L MIR6833 RXRB SAPCD1 HLA-DQA2 PSMB8 ZBTB12 SLC44A4 HLA-DMA LTA BRD2 LY6G5B LOC100287329 NELFE STK19 SLC39A7 MIR4646 HLA-DRB5 B3GALT4 HLA-DRB6 LOC100294145 PFDN6 HLA-DRB1 C4B DDX39B MSH5 MIR1236 SYNGAP1 MIR6873 C6orf25 HCG23 MIR6834 GPSM3 VARS MICB PRRC2A LSM2 ATP6V1G2 PBX2 PHF1 ATP6V1G2-DDX39B TNXB TAP1 HLA-DQB1-AS1 DDAH2 BAG6 MSH5-SAPCD1 HLA-DPB2 KIFC1 HLA-DQB2 NEU1 CFB LY6G6D CLIC1 MCCD1 HLA-DRA CSNK2B PPP1R2P1 TAPBP LOC101929163 MIR219A1 SNORD48 PSMB8-AS1 AGER DAXX NFKBIL1 ABHD16A LY6G6E AIF1 TAP2 DXO ZBTB9 EGFL8 HLA-DMB HLA-DQA1 VWA7 CYP21A1P RING1 AGPAT1 NCR3 GPANK1 LY6G6C DDX39B-AS1 PRRT1 C6orf47 LOC102725068 BTNL2 HLA-DPA1 HLA-DOB RNF5 NOTCH4 C6orf48 CUTA SNORA38 PPT2-EGFL8 MIR6832 SNORD52 HCG26 EHMT2 RGL2
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion HLA-DOA HCP5 HCG25 HLA-DQB1 VPS52 WDR46 C6orf10 APOM LY6G5C SAPCD1-AS1 HSPA1L PPT2 PSMB9 COL11A2 ZBTB22 SNORD84 LOC100507547 MIR6721 C4A FKBPL CYP21A2 HLA-DPB1 HSPA1A LTB SNORD117 TNF C2 RPS18 HSD17B8 HCG24 ATF6B HSPA1B TNXA LY6G6F MIR5004 LST1 MIR3135B C2-AS1 SKIV2L MIR6833 RXRB SAPCD1 HLA-DQA2 PSMB8 ZBTB12 SLC44A4 HLA-DMA LTA BRD2 LY6G5B LOC100287329 NELFE STK19 SLC39A7 MIR4646 HLA-DRB5 B3GALT4 HLA-DRB6 LOC100294145 PFDN6 HLA-DRB1 C4B DDX39B MSH5 MIR1236 SYNGAP1 MIR6873 C6orf25 HCG23 MIR6834 GPSM3 VARS MICB PRRC2A LSM2 ATP6V1G2 PBX2 PHF1 ATP6V1G2-DDX39B TNXB TAP1 HLA-DQB1-AS1 DDAH2 BAG6 MSH5-SAPCD1 HLA-DPB2 KIFC1 HLA-DQB2 NEU1 CFB LY6G6D CLIC1 MCCD1 HLA-DRA CSNK2B PPP1R2P1 TAPBP LOC101929163 MIR219A1 SNORD48 PSMB8-AS1 AGER DAXX NFKBIL1 ABHD16A LY6G6E AIF1 TAP2 DXO ZBTB9 EGFL8 HLA-DMB HLA-DQA1 VWA7 CYP21A1P RING1 AGPAT1 NCR3 GPANK1 LY6G6C DDX39B-AS1 PRRT1 C6orf47 LOC102725068 BTNL2 HLA-DPA1 HLA-DOB RNF5 NOTCH4 C6orf48 CUTA SNORA38 PPT2-EGFL8 MIR6832 SNORD52 HCG26 EHMT2 RGL2
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss GPSM3 VARS MICB PRRC2A LSM2 ATP6V1G2 PBX2 HCP5 C6orf10 APOM ATP6V1G2-DDX39B LY6G5C TNXB SAPCD1-AS1 HSPA1L PPT2 DDAH2 BAG6 MSH5-SAPCD1 SNORD84 LOC100507547 MIR6721 NEU1 CFB C4A LY6G6D CLIC1 MCCD1 FKBPL HLA-DRA CSNK2B HLA-B CYP21A2 LOC101929163 HSPA1A SNORD48 AGER LTB SNORD117 TNF NFKBIL1 C2 ABHD16A LY6G6E AIF1 ATF6B MICA HSPA1B TNXA DXO EGFL8 LY6G6F VWA7 LST1 CYP21A1P C2-AS1 SKIV2L MIR6833 AGPAT1 NCR3 SAPCD1 GPANK1 LY6G6C DDX39B-AS1 PRRT1 ZBTB12 C6orf47 SLC44A4 LOC102725068 LTA BTNL2 LY6G5B LOC100287329 NELFE STK19 MIR6891 RNF5 MIR4646 NOTCH4 C6orf48 SNORA38 PPT2-EGFL8 MIR6832 C4B DDX39B SNORD52 HCG26 MSH5 EHMT2 MIR1236 C6orf25 HCG23
nsv470809 Chr.6:31529138 - 31576412 on Build GRCh38 Loss LOC100287329 MCCD1 ATP6V1G2 DDX39B SNORD117 TNF DDX39B-AS1 NFKBIL1 ATP6V1G2-DDX39B SNORD84 LTA
nsv830627 Chr.6:31528437 - 31692173 on Build GRCh38 Loss PRRC2A ATP6V1G2 APOM ATP6V1G2-DDX39B LY6G5C LST1 NCR3 GPANK1 DDX39B-AS1 BAG6 C6orf47 SNORD84 LTA LY6G5B LOC100287329 MCCD1 CSNK2B SNORA38 MIR6832 LTB DDX39B SNORD117 TNF NFKBIL1 ABHD16A AIF1

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