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See other NELFE CNV Assays ›
Gene Symbol
NELFE
Assay Reference Genome
Location

Chr.6:31953634 on build GRCh38
Cytoband
6p21.33
Assay ID Hs03599783_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 7936

Gene Name:

 negative elongation factor complex member E

Gene Aliases:

 D6S45, NELF-E, RD, RDBP, RDP

Location:

 Chr.6:31952087-31959087 on Build GRCh38

Assay Gene Location:

 Within Intron 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
NELFE NM_002904.5 NP_002895.3
XM_006715205.3 XP_006715268.1
XM_011514913.2 XP_011513215.1
XM_017011299.1 XP_016866788.1
AK300717.1
AK300898.1
AK302652.1
AK303152.1
BC025235.1 AAH25235.1
BC050617.2 AAH50617.1
JQ313904.1
L03411.1 AAC37523.1
X16105.1 CAA34231.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss SLC44A4 HLA-DQB1 TNXA NEU1 FKBPL HSPA1A CYP21A1P LOC100507547 LOC101929163 NOTCH4 ZBTB12 PPT2-EGFL8 C2-AS1 DXO PBX2 GPSM3 C4B AGPAT1 HLA-DRB1 AGER STK19 RNF5 SNORD52 C2 HLA-DQA1 PRRT1 ATF6B PPT2 HSPA1B NELFE HCG23 CYP21A2 EGFL8 C4A MIR6721 TNXB SNORD48 HLA-DQB1-AS1 BTNL2 MIR6833 HLA-DRB5 SKIV2L C6orf10 HLA-DRB6 HLA-DRA CFB C6orf48 EHMT2 MIR1236
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss STK19 RNF5 C2 PRRT1 ATF6B TNXA PPT2 NELFE CYP21A2 EGFL8 C4A MIR6721 TNXB FKBPL CYP21A1P LOC100507547 NOTCH4 MIR6833 SKIV2L PPT2-EGFL8 C2-AS1 CFB DXO PBX2 GPSM3 MIR1236 C4B AGPAT1 AGER
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion DDX39B-AS1 SLC44A4 LY6G6D GPANK1 TNXA C6orf25 APOM PRRC2A MIR6832 NEU1 BAG6 NFKBIL1 LOC102725068 SAPCD1-AS1 SNORD117 ATP6V1G2 HSPA1L FKBPL HSPA1A CYP21A1P HCP5 DDAH2 LOC100507547 SAPCD1 LOC101929163 NOTCH4 MICB LY6G5B ZBTB12 PPT2-EGFL8 VARS LST1 MCCD1 AIF1 C2-AS1 DXO TNF PBX2 GPSM3 MSH5 SNORD84 LSM2 C4B AGPAT1 ABHD16A HLA-DRB1 AGER MIR4646 STK19 RNF5 C6orf47 SNORD52 C2 PRRT1 ATF6B DDX39B LOC100287329 PPT2 CLIC1 HSPA1B NELFE ATP6V1G2-DDX39B HCG23 CYP21A2 EGFL8 C4A MIR6721 TNXB LY6G6C SNORD48 HCG26 CSNK2B LY6G6E BTNL2 LY6G6F MIR6833 LTA HLA-DRB5 SKIV2L C6orf10 HLA-DRB6 HLA-DRA NCR3 LTB CFB SNORA38 C6orf48 EHMT2 MIR1236 LY6G5C VWA7 MSH5-SAPCD1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion HLA-DQB2 LY6G6D HLA-DQB1 C6orf25 APOM PRRC2A MIR6832 NFKBIL1 LOC102725068 SNORD117 WDR46 ATP6V1G2 HSPA1L FKBPL HSPA1A CYP21A1P HCP5 DAXX DDAH2 HSD17B8 NOTCH4 HLA-DMB MICB PSMB8-AS1 ZBTB9 ZBTB12 VARS C2-AS1 DXO LSM2 C4B AGPAT1 RXRB HLA-DRB1 AGER STK19 RNF5 C6orf47 SNORD52 HLA-DQA1 PRRT1 RPS18 LOC100287329 PPT2 MIR3135B ATP6V1G2-DDX39B HLA-DOB HCG23 EGFL8 MIR6721 TNXB LY6G6C LOC100294145 HLA-DQB1-AS1 LY6G6E BTNL2 TAPBP LTA HLA-DRB5 TAP2 HLA-DRB6 HLA-DQA2 LTB SNORA38 EHMT2 PSMB9 LY6G5C VWA7 MSH5-SAPCD1 DDX39B-AS1 SLC44A4 BRD2 GPANK1 TNXA TAP1 SLC39A7 NEU1 HLA-DPA1 BAG6 PPP1R2P1 SAPCD1-AS1 VPS52 HCG25 RING1 LOC100507547 SAPCD1 LOC101929163 PFDN6 LY6G5B SYNGAP1 PPT2-EGFL8 LST1 MCCD1 AIF1 TNF PBX2 GPSM3 MSH5 SNORD84 ABHD16A MIR219A1 COL11A2 MIR4646 CUTA C2 ATF6B B3GALT4 HCG24 DDX39B KIFC1 CLIC1 HSPA1B NELFE ZBTB22 CYP21A2 C4A SNORD48 MIR6834 HCG26 HLA-DPB1 CSNK2B LY6G6F HLA-DOA HLA-DMA MIR6833 HLA-DPB2 SKIV2L MIR5004 C6orf10 HLA-DRA NCR3 RGL2 PHF1 CFB C6orf48 MIR1236 MIR6873 PSMB8
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss DDX39B-AS1 SLC44A4 LY6G6D GPANK1 MICA TNXA C6orf25 APOM PRRC2A MIR6832 NEU1 BAG6 NFKBIL1 LOC102725068 SAPCD1-AS1 SNORD117 ATP6V1G2 HSPA1L HSPA1A CYP21A1P HCP5 DDAH2 HLA-B SAPCD1 MICB LY6G5B ZBTB12 VARS LST1 MCCD1 AIF1 C2-AS1 DXO TNF MSH5 SNORD84 LSM2 C4B ABHD16A MIR6891 MIR4646 STK19 C6orf47 SNORD52 C2 DDX39B LOC100287329 CLIC1 HSPA1B NELFE ATP6V1G2-DDX39B CYP21A2 C4A TNXB LY6G6C SNORD48 HCG26 CSNK2B LY6G6E LY6G6F LTA SKIV2L NCR3 LTB CFB SNORA38 C6orf48 EHMT2 MIR1236 LY6G5C VWA7 MSH5-SAPCD1
nsv830628 Chr.6:31919777 - 31979823 on Build GRCh38 Loss STK19 NELFE C2-AS1 CFB DXO C2 MIR1236 SKIV2L
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion HLA-DQB2 LY6G6D HLA-DQB1 C6orf25 APOM PRRC2A MIR6832 NFKBIL1 LOC102725068 SNORD117 WDR46 ATP6V1G2 HSPA1L FKBPL HSPA1A CYP21A1P HCP5 DAXX DDAH2 HSD17B8 NOTCH4 HLA-DMB MICB PSMB8-AS1 ZBTB9 ZBTB12 VARS C2-AS1 DXO LSM2 C4B AGPAT1 RXRB HLA-DRB1 AGER STK19 RNF5 C6orf47 SNORD52 HLA-DQA1 PRRT1 RPS18 LOC100287329 PPT2 MIR3135B ATP6V1G2-DDX39B HLA-DOB HCG23 EGFL8 MIR6721 TNXB LY6G6C LOC100294145 HLA-DQB1-AS1 LY6G6E BTNL2 TAPBP LTA HLA-DRB5 TAP2 HLA-DRB6 HLA-DQA2 LTB SNORA38 EHMT2 PSMB9 LY6G5C VWA7 MSH5-SAPCD1 DDX39B-AS1 SLC44A4 BRD2 GPANK1 TNXA TAP1 SLC39A7 NEU1 HLA-DPA1 BAG6 PPP1R2P1 SAPCD1-AS1 VPS52 HCG25 RING1 LOC100507547 SAPCD1 LOC101929163 PFDN6 LY6G5B SYNGAP1 PPT2-EGFL8 LST1 MCCD1 AIF1 TNF PBX2 GPSM3 MSH5 SNORD84 ABHD16A MIR219A1 COL11A2 MIR4646 CUTA C2 ATF6B B3GALT4 HCG24 DDX39B KIFC1 CLIC1 HSPA1B NELFE ZBTB22 CYP21A2 C4A SNORD48 MIR6834 HCG26 HLA-DPB1 CSNK2B LY6G6F HLA-DOA HLA-DMA MIR6833 HLA-DPB2 SKIV2L MIR5004 C6orf10 HLA-DRA NCR3 RGL2 PHF1 CFB C6orf48 MIR1236 MIR6873 PSMB8
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss DDX39B-AS1 SLC44A4 LY6G6D GPANK1 MICA TNXA C6orf25 APOM PRRC2A MIR6832 NEU1 BAG6 NFKBIL1 LOC102725068 SAPCD1-AS1 SNORD117 ATP6V1G2 HSPA1L FKBPL HSPA1A CYP21A1P HCP5 DDAH2 HLA-B LOC100507547 SAPCD1 LOC101929163 NOTCH4 MICB LY6G5B ZBTB12 PPT2-EGFL8 VARS LST1 MCCD1 AIF1 C2-AS1 DXO TNF PBX2 GPSM3 MSH5 SNORD84 LSM2 C4B AGPAT1 ABHD16A AGER MIR6891 MIR4646 STK19 RNF5 C6orf47 SNORD52 C2 PRRT1 ATF6B DDX39B LOC100287329 PPT2 CLIC1 HSPA1B NELFE ATP6V1G2-DDX39B HCG23 CYP21A2 EGFL8 C4A MIR6721 TNXB LY6G6C SNORD48 HCG26 CSNK2B LY6G6E BTNL2 LY6G6F MIR6833 LTA SKIV2L C6orf10 HLA-DRA NCR3 LTB CFB SNORA38 C6orf48 EHMT2 MIR1236 LY6G5C VWA7 MSH5-SAPCD1

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