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See other NELFE CNV Assays ›
Gene Symbol
NELFE
Assay Reference Genome
Location

Chr.6:31953634 on build GRCh38
Cytoband
6p21.33
Assay ID Hs03599783_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 7936

Gene Name:

 negative elongation factor complex member E

Gene Aliases:

 D6S45, NELF-E, RD, RDBP, RDP

Location:

 Chr.6:31952087-31959087 on Build GRCh38

Assay Gene Location:

 Within Intron 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
NELFE NM_002904.5 NP_002895.3
XM_006715205.3 XP_006715268.1
XM_011514913.2 XP_011513215.1
XM_017011299.1 XP_016866788.1
AK300717.1
AK300898.1
AK302652.1
AK303152.1
BC025235.1 AAH25235.1
BC050617.2 AAH50617.1
JQ313904.1
L03411.1 AAC37523.1
X16105.1 CAA34231.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss STK19 EHMT2 C4A SLC44A4 GPSM3 C2-AS1 AGPAT1 FKBPL HSPA1B EGFL8 RNF5 PBX2 C6orf10 SNORD52 MIR1236 HCG23 C2 CYP21A2 HLA-DRB1 ATF6B PPT2-EGFL8 HLA-DRB5 HLA-DRB6 MIR6721 NEU1 NOTCH4 HLA-DRA SNORD48 NELFE HLA-DQA1 HSPA1A ZBTB12 HLA-DQB1 MIR6833 BTNL2 DXO C4B C6orf48 PRRT1 LOC100507547 LOC101929163 PPT2 CFB AGER HLA-DQB1-AS1 TNXB SKIV2L TNXA CYP21A1P
nsv428141 Chr.6:31903735 - 32125066 on Build GRCh38 Gain+Loss NELFE STK19 C4A CFB MIR1236 TNXB C2-AS1 C2 CYP21A2 ATF6B DXO C4B SKIV2L TNXA CYP21A1P
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion ATP6V1G2 STK19 EHMT2 MIR6832 C4A MIR4646 LY6G5B DDX39B SLC44A4 GPSM3 HCG26 C2-AS1 LY6G6D TNF AGPAT1 MCCD1 AIF1 LSM2 FKBPL ATP6V1G2-DDX39B HSPA1B EGFL8 BAG6 RNF5 PBX2 GPANK1 C6orf10 SNORD52 SAPCD1-AS1 ABHD16A VWA7 MIR1236 HCG23 NFKBIL1 DDAH2 C2 CYP21A2 HLA-DRB1 HSPA1L LST1 NCR3 LY6G5C ATF6B PPT2-EGFL8 HLA-DRB5 APOM LTB HLA-DRB6 VARS SNORA38 MIR6721 PRRC2A C6orf47 NEU1 NOTCH4 LTA HLA-DRA LOC100287329 SNORD48 NELFE SNORD117 HCP5 HSPA1A ZBTB12 CLIC1 MIR6833 BTNL2 LY6G6E MSH5-SAPCD1 DXO C4B C6orf48 PRRT1 CSNK2B SNORD84 LOC100507547 C6orf25 LOC101929163 PPT2 CFB LY6G6F AGER TNXB SAPCD1 MICB LOC102725068 SKIV2L LY6G6C TNXA DDX39B-AS1 MSH5 CYP21A1P
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss ATP6V1G2 STK19 EHMT2 MIR6832 C4A MIR4646 LY6G5B DDX39B SLC44A4 HCG26 C2-AS1 LY6G6D TNF MCCD1 AIF1 LSM2 ATP6V1G2-DDX39B HSPA1B BAG6 GPANK1 SNORD52 SAPCD1-AS1 ABHD16A VWA7 MIR1236 NFKBIL1 DDAH2 C2 CYP21A2 HSPA1L LST1 NCR3 LY6G5C APOM LTB VARS SNORA38 MIR6891 PRRC2A C6orf47 NEU1 LTA LOC100287329 SNORD48 MICA NELFE SNORD117 HCP5 HSPA1A ZBTB12 HLA-B CLIC1 LY6G6E MSH5-SAPCD1 DXO C4B C6orf48 CSNK2B SNORD84 C6orf25 CFB LY6G6F TNXB SAPCD1 MICB LOC102725068 SKIV2L LY6G6C TNXA DDX39B-AS1 MSH5 CYP21A1P
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion HLA-DPB1 PSMB9 STK19 EHMT2 MIR6832 MIR4646 DDX39B SLC44A4 C2-AS1 LY6G6D TNF AGPAT1 KIFC1 AIF1 PSMB8 LSM2 ATP6V1G2-DDX39B EGFL8 RGL2 BAG6 RNF5 PBX2 WDR46 C6orf10 SAPCD1-AS1 VWA7 VPS52 RXRB DDAH2 CYP21A2 HLA-DRB1 LST1 NCR3 LY6G5C PPP1R2P1 APOM LTB HLA-DRB6 VARS PRRC2A LTA LOC100287329 SNORD48 MIR5004 SNORD117 MIR219A1 ZBTB12 MIR6873 ZBTB9 CLIC1 B3GALT4 HCG25 MIR6833 BTNL2 MSH5-SAPCD1 C4B CSNK2B SNORD84 LOC100507547 COL11A2 PPT2 HLA-DMA HLA-DOB AGER SAPCD1 HLA-DQA2 SKIV2L LY6G6C DDX39B-AS1 MSH5 CYP21A1P ATP6V1G2 C4A HLA-DMB LY6G5B GPSM3 HCG26 ZBTB22 PHF1 MCCD1 PSMB8-AS1 MIR3135B FKBPL HSPA1B GPANK1 BRD2 SNORD52 ABHD16A MIR1236 CUTA HCG23 NFKBIL1 C2 HSPA1L ATF6B PPT2-EGFL8 HLA-DRB5 SNORA38 MIR6721 C6orf47 NEU1 NOTCH4 HLA-DRA HCG24 NELFE HLA-DPB2 HLA-DQA1 HLA-DQB2 HCP5 HSPA1A HLA-DQB1 MIR6834 LY6G6E DXO PFDN6 TAP1 TAPBP DAXX HSD17B8 C6orf48 LOC100294145 PRRT1 C6orf25 LOC101929163 RPS18 SLC39A7 CFB LY6G6F HLA-DQB1-AS1 TNXB TAP2 SYNGAP1 RING1 MICB LOC102725068 HLA-DPA1 HLA-DOA TNXA
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion HLA-DPB1 PSMB9 STK19 EHMT2 MIR6832 MIR4646 DDX39B SLC44A4 C2-AS1 LY6G6D TNF AGPAT1 KIFC1 AIF1 PSMB8 LSM2 ATP6V1G2-DDX39B EGFL8 RGL2 BAG6 RNF5 PBX2 WDR46 C6orf10 SAPCD1-AS1 VWA7 VPS52 RXRB DDAH2 CYP21A2 HLA-DRB1 LST1 NCR3 LY6G5C PPP1R2P1 APOM LTB HLA-DRB6 VARS PRRC2A LTA LOC100287329 SNORD48 MIR5004 SNORD117 MIR219A1 ZBTB12 MIR6873 ZBTB9 CLIC1 B3GALT4 HCG25 MIR6833 BTNL2 MSH5-SAPCD1 C4B CSNK2B SNORD84 LOC100507547 COL11A2 PPT2 HLA-DMA HLA-DOB AGER SAPCD1 HLA-DQA2 SKIV2L LY6G6C DDX39B-AS1 MSH5 CYP21A1P ATP6V1G2 C4A HLA-DMB LY6G5B GPSM3 HCG26 ZBTB22 PHF1 MCCD1 PSMB8-AS1 MIR3135B FKBPL HSPA1B GPANK1 BRD2 SNORD52 ABHD16A MIR1236 CUTA HCG23 NFKBIL1 C2 HSPA1L ATF6B PPT2-EGFL8 HLA-DRB5 SNORA38 MIR6721 C6orf47 NEU1 NOTCH4 HLA-DRA HCG24 NELFE HLA-DPB2 HLA-DQA1 HLA-DQB2 HCP5 HSPA1A HLA-DQB1 MIR6834 LY6G6E DXO PFDN6 TAP1 TAPBP DAXX HSD17B8 C6orf48 LOC100294145 PRRT1 C6orf25 LOC101929163 RPS18 SLC39A7 CFB LY6G6F HLA-DQB1-AS1 TNXB TAP2 SYNGAP1 RING1 MICB LOC102725068 HLA-DPA1 HLA-DOA TNXA
nsv830628 Chr.6:31919777 - 31979823 on Build GRCh38 Loss NELFE DXO STK19 CFB SKIV2L MIR1236 C2-AS1 C2
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss ATP6V1G2 STK19 EHMT2 MIR6832 C4A MIR4646 LY6G5B DDX39B SLC44A4 GPSM3 HCG26 C2-AS1 LY6G6D TNF AGPAT1 MCCD1 AIF1 LSM2 FKBPL ATP6V1G2-DDX39B HSPA1B EGFL8 BAG6 RNF5 PBX2 GPANK1 C6orf10 SNORD52 SAPCD1-AS1 ABHD16A VWA7 MIR1236 HCG23 NFKBIL1 DDAH2 C2 CYP21A2 HSPA1L LST1 NCR3 LY6G5C ATF6B PPT2-EGFL8 APOM LTB VARS SNORA38 MIR6891 MIR6721 PRRC2A C6orf47 NEU1 NOTCH4 LTA HLA-DRA LOC100287329 SNORD48 MICA NELFE SNORD117 HCP5 HSPA1A ZBTB12 HLA-B CLIC1 MIR6833 BTNL2 LY6G6E MSH5-SAPCD1 DXO C4B C6orf48 PRRT1 CSNK2B SNORD84 LOC100507547 C6orf25 LOC101929163 PPT2 CFB LY6G6F AGER TNXB SAPCD1 MICB LOC102725068 SKIV2L LY6G6C TNXA DDX39B-AS1 MSH5 CYP21A1P

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