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Gene Symbol
C2
Assay Reference Genome
Location

Chr.6:31906594 on build GRCh38
Cytoband
6p21.33
Assay ID Hs03601488_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 717

Gene Name:

 complement component 2

Gene Aliases:

 ARMD14, CO2

Location:

 Chr.6:31897785-31945674 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
C2 NM_001178063.2 NP_001171534.1
NM_001282457.1 NP_001269386.1
AK096258.1
AK298311.1
AK298808.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv601960 Chr.6:31870664 - 31939370 on Build GRCh38 Loss C2 ZBTB12 C2-AS1 EHMT2 SLC44A4
nsv823505 Chr.6:31903462 - 31907392 on Build GRCh38 Loss C2
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SLC39A7 LY6G6C SNORD84 TNXA STK19 LOC100294145 ATP6V1G2-DDX39B PRRT1 LTA VPS52 ABHD16A B3GALT4 PSMB9 ZBTB9 GPSM3 DXO HCP5 HLA-DMB HLA-DPB2 HCG24 SLC44A4 CYP21A2 MIR219A1 HLA-DPB1 TAP1 AGER LOC100507547 NOTCH4 CUTA HSPA1A MCCD1 LY6G6E EGFL8 HLA-DRB1 MIR5004 GPANK1 C2-AS1 LOC102725068 SYNGAP1 HLA-DRA RING1 HSPA1L HLA-DQB2 VWA7 RGL2 APOM TNF VARS CYP21A1P HLA-DRB5 SNORA38 KIFC1 DDX39B-AS1 HLA-DPA1 C6orf10 C6orf48 C6orf25 CLIC1 DDAH2 PFDN6 MICB SKIV2L ZBTB12 LOC101929163 BRD2 HLA-DRB6 PBX2 MIR6832 MSH5 CFB RNF5 SAPCD1-AS1 SNORD52 C6orf47 BTNL2 MIR3135B ATP6V1G2 DAXX MSH5-SAPCD1 MIR6873 HLA-DOB HLA-DQA2 HLA-DQB1 SNORD48 MIR6833 HLA-DMA C2 COL11A2 EHMT2 SAPCD1 MIR6834 TNXB LTB LST1 MIR1236 LY6G5C LY6G5B LY6G6D TAP2 AGPAT1 ATF6B PHF1 LY6G6F FKBPL CSNK2B PSMB8 ZBTB22 LSM2 PRRC2A MIR4646 HLA-DQA1 BAG6 HCG23 TAPBP C4A HSD17B8 DDX39B PSMB8-AS1 HSPA1B HLA-DQB1-AS1 HCG25 HCG26 SNORD117 C4B PPP1R2P1 PPT2-EGFL8 RXRB HLA-DOA MIR6721 PPT2 WDR46 AIF1 NEU1 LOC100287329 NCR3 RPS18 NELFE NFKBIL1
dgv10465n54 Chr.6:31903977 - 31910331 on Build GRCh38 Loss C2
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss SNORD52 C6orf47 BTNL2 ATP6V1G2 LY6G6C MSH5-SAPCD1 SNORD84 TNXA STK19 ATP6V1G2-DDX39B SNORD48 PRRT1 MIR6833 LTA C2 ABHD16A GPSM3 DXO EHMT2 SAPCD1 TNXB HCP5 LTB LST1 MIR1236 LY6G5C LY6G5B LY6G6D SLC44A4 CYP21A2 AGPAT1 ATF6B LY6G6F FKBPL AGER CSNK2B LOC100507547 NOTCH4 LSM2 PRRC2A MIR4646 MIR6891 BAG6 HSPA1A MCCD1 HCG23 HLA-B LY6G6E EGFL8 C4A GPANK1 DDX39B C2-AS1 LOC102725068 HSPA1B HLA-DRA HSPA1L HCG26 VWA7 SNORD117 APOM C4B TNF VARS CYP21A1P SNORA38 PPT2-EGFL8 MIR6721 PPT2 DDX39B-AS1 AIF1 NEU1 C6orf10 C6orf48 C6orf25 CLIC1 DDAH2 LOC100287329 NCR3 MICB SKIV2L ZBTB12 LOC101929163 NELFE PBX2 MIR6832 NFKBIL1 MICA MSH5 CFB RNF5 SAPCD1-AS1
esv2658525 Chr.6:31903367 - 31911036 on Build GRCh38 Deletion C2
esv3608572 Chr.6:31903347 - 31910697 on Build GRCh38 Loss C2
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss SNORD52 BTNL2 TNXA STK19 HLA-DQB1 SNORD48 PRRT1 MIR6833 C2 GPSM3 DXO EHMT2 TNXB MIR1236 SLC44A4 CYP21A2 AGPAT1 ATF6B FKBPL AGER LOC100507547 NOTCH4 HLA-DQA1 HSPA1A HCG23 EGFL8 HLA-DRB1 C4A C2-AS1 HSPA1B HLA-DRA HLA-DQB1-AS1 C4B CYP21A1P HLA-DRB5 PPT2-EGFL8 MIR6721 PPT2 NEU1 C6orf10 C6orf48 SKIV2L ZBTB12 LOC101929163 NELFE HLA-DRB6 PBX2 CFB RNF5
nsv428141 Chr.6:31903735 - 32125066 on Build GRCh38 Gain+Loss CYP21A1P MIR1236 C2-AS1 TNXA STK19 CYP21A2 ATF6B C2 SKIV2L NELFE DXO C4B CFB TNXB C4A
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion SNORD52 C6orf47 BTNL2 ATP6V1G2 LY6G6C MSH5-SAPCD1 SNORD84 TNXA STK19 ATP6V1G2-DDX39B SNORD48 PRRT1 MIR6833 LTA C2 ABHD16A GPSM3 DXO EHMT2 SAPCD1 TNXB HCP5 LTB LST1 MIR1236 LY6G5C LY6G5B LY6G6D SLC44A4 CYP21A2 AGPAT1 ATF6B LY6G6F FKBPL AGER CSNK2B LOC100507547 NOTCH4 LSM2 PRRC2A MIR4646 BAG6 HSPA1A MCCD1 HCG23 LY6G6E EGFL8 HLA-DRB1 C4A GPANK1 DDX39B C2-AS1 LOC102725068 HSPA1B HLA-DRA HSPA1L HCG26 VWA7 SNORD117 APOM C4B TNF VARS CYP21A1P HLA-DRB5 SNORA38 PPT2-EGFL8 MIR6721 PPT2 DDX39B-AS1 AIF1 NEU1 C6orf10 C6orf48 C6orf25 CLIC1 DDAH2 LOC100287329 NCR3 MICB SKIV2L ZBTB12 LOC101929163 NELFE HLA-DRB6 PBX2 MIR6832 NFKBIL1 MSH5 CFB RNF5 SAPCD1-AS1
esv2731824 Chr.6:31903427 - 31911207 on Build GRCh38 Deletion C2
nsv10823 Chr.6:31903219 - 31912449 on Build GRCh38 Loss C2
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss SNORD52 C6orf47 ATP6V1G2 LY6G6C MSH5-SAPCD1 SNORD84 TNXA STK19 ATP6V1G2-DDX39B SNORD48 LTA C2 ABHD16A DXO EHMT2 SAPCD1 TNXB HCP5 LTB LST1 MIR1236 LY6G5C LY6G5B LY6G6D SLC44A4 CYP21A2 LY6G6F CSNK2B LSM2 PRRC2A MIR4646 MIR6891 BAG6 HSPA1A MCCD1 HLA-B LY6G6E C4A GPANK1 DDX39B C2-AS1 LOC102725068 HSPA1B HSPA1L HCG26 VWA7 SNORD117 APOM C4B TNF VARS CYP21A1P SNORA38 DDX39B-AS1 AIF1 NEU1 C6orf48 C6orf25 CLIC1 DDAH2 LOC100287329 NCR3 MICB SKIV2L ZBTB12 NELFE MIR6832 NFKBIL1 MICA MSH5 CFB SAPCD1-AS1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SLC39A7 LY6G6C SNORD84 TNXA STK19 LOC100294145 ATP6V1G2-DDX39B PRRT1 LTA VPS52 ABHD16A B3GALT4 PSMB9 ZBTB9 GPSM3 DXO HCP5 HLA-DMB HLA-DPB2 HCG24 SLC44A4 CYP21A2 MIR219A1 HLA-DPB1 TAP1 AGER LOC100507547 NOTCH4 CUTA HSPA1A MCCD1 LY6G6E EGFL8 HLA-DRB1 MIR5004 GPANK1 C2-AS1 LOC102725068 SYNGAP1 HLA-DRA RING1 HSPA1L HLA-DQB2 VWA7 RGL2 APOM TNF VARS CYP21A1P HLA-DRB5 SNORA38 KIFC1 DDX39B-AS1 HLA-DPA1 C6orf10 C6orf48 C6orf25 CLIC1 DDAH2 PFDN6 MICB SKIV2L ZBTB12 LOC101929163 BRD2 HLA-DRB6 PBX2 MIR6832 MSH5 CFB RNF5 SAPCD1-AS1 SNORD52 C6orf47 BTNL2 MIR3135B ATP6V1G2 DAXX MSH5-SAPCD1 MIR6873 HLA-DOB HLA-DQA2 HLA-DQB1 SNORD48 MIR6833 HLA-DMA C2 COL11A2 EHMT2 SAPCD1 MIR6834 TNXB LTB LST1 MIR1236 LY6G5C LY6G5B LY6G6D TAP2 AGPAT1 ATF6B PHF1 LY6G6F FKBPL CSNK2B PSMB8 ZBTB22 LSM2 PRRC2A MIR4646 HLA-DQA1 BAG6 HCG23 TAPBP C4A HSD17B8 DDX39B PSMB8-AS1 HSPA1B HLA-DQB1-AS1 HCG25 HCG26 SNORD117 C4B PPP1R2P1 PPT2-EGFL8 RXRB HLA-DOA MIR6721 PPT2 WDR46 AIF1 NEU1 LOC100287329 NCR3 RPS18 NELFE NFKBIL1
esv2422045 Chr.6:31903708 - 31910718 on Build GRCh38 Deletion C2
nsv509126 Chr.6:31861697 - 31934646 on Build GRCh38 Insertion C2 ZBTB12 C2-AS1 EHMT2 SLC44A4 NEU1

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More Information


Additional Information:

For this assay, SNP(s) [rs66804014] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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