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Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32176476 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03602980_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 3 - Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_032741.4 NP_116130.2
XM_005248805.3 XP_005248862.1
XM_005248806.2 XP_005248863.1
XM_011514234.1 XP_011512536.1
AK056346.1
BC002402.2 AAH02402.1
BC003007.1 AAH03007.1
DB118884.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss AGPAT1 RNF5 MIR6721 FKBPL MIR6833 PPT2-EGFL8 LOC100507547 EGFL8 AGER ATF6B PRRT1 PBX2 NOTCH4 TNXB PPT2 GPSM3
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss C2 C6orf48 SNORD48 C6orf10 CFB MIR6833 EHMT2 TNXB ZBTB12 LOC101929163 NELFE SNORD52 DXO CYP21A1P TNXA BTNL2 NEU1 AGER PBX2 C4B SKIV2L HLA-DRB1 MIR1236 C4A STK19 HLA-DRB6 SLC44A4 EGFL8 ATF6B CYP21A2 PRRT1 HLA-DRB5 HSPA1B PPT2 HSPA1A AGPAT1 RNF5 MIR6721 C2-AS1 FKBPL PPT2-EGFL8 HLA-DQA1 HCG23 HLA-DQB1 HLA-DRA LOC100507547 HLA-DQB1-AS1 NOTCH4 GPSM3
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss C4B C6orf10 HLA-DRB1 C4A MIR6833 HLA-DQA2 HLA-DRB6 EGFL8 ATF6B CYP21A2 PRRT1 TNXB HLA-DRB5 LOC101929163 PPT2 AGPAT1 HLA-DQB2 RNF5 MIR6721 FKBPL CYP21A1P PPT2-EGFL8 HLA-DQA1 MIR3135B TNXA BTNL2 HCG23 HLA-DQB1 HLA-DRA LOC100507547 AGER HLA-DQB1-AS1 PBX2 NOTCH4 GPSM3
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss C4B C2 SKIV2L MIR1236 CFB C4A STK19 MIR6833 EGFL8 ATF6B CYP21A2 PRRT1 TNXB PPT2 NELFE AGPAT1 RNF5 MIR6721 C2-AS1 FKBPL DXO CYP21A1P PPT2-EGFL8 TNXA LOC100507547 AGER PBX2 NOTCH4 GPSM3
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion C2 C6orf48 MSH5 HCG26 SNORD48 SNORA38 ABHD16A C6orf10 LY6G6F CFB GPANK1 LY6G6D ATP6V1G2-DDX39B MIR6833 EHMT2 NFKBIL1 TNF TNXB ZBTB12 LOC101929163 NELFE C6orf25 LY6G6C VWA7 HCP5 LTA SNORD52 VARS LSM2 DXO CYP21A1P TNXA LST1 BTNL2 NEU1 LOC102725068 AGER CLIC1 C6orf47 MIR6832 PBX2 HSPA1L LTB C4B ATP6V1G2 SKIV2L MCCD1 DDX39B LOC100287329 HLA-DRB1 BAG6 MIR1236 C4A STK19 DDX39B-AS1 APOM SNORD117 HLA-DRB6 SLC44A4 EGFL8 ATF6B CYP21A2 DDAH2 LY6G6E PRRT1 HLA-DRB5 HSPA1B PPT2 HSPA1A AGPAT1 NCR3 RNF5 MIR6721 AIF1 PRRC2A C2-AS1 CSNK2B FKBPL SNORD84 PPT2-EGFL8 LY6G5B HCG23 HLA-DRA LOC100507547 LY6G5C SAPCD1 MIR4646 MICB MSH5-SAPCD1 NOTCH4 GPSM3 SAPCD1-AS1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion C2 C6orf48 ZBTB9 MSH5 TAP1 BRD2 HCG26 SNORD48 SNORA38 ABHD16A B3GALT4 C6orf10 LY6G6F HCG24 TAP2 LY6G6D ATP6V1G2-DDX39B MIR6833 EHMT2 NFKBIL1 TNF ZBTB12 LOC101929163 NELFE RXRB VWA7 LTA VARS DXO TNXA LST1 BTNL2 AGER PSMB9 MIR6832 HLA-DOB DAXX ATP6V1G2 HLA-DMA DDX39B LOC100287329 MIR5004 HLA-DPB2 MIR1236 C4A DDX39B-AS1 APOM PFDN6 SNORD117 CYP21A2 DDAH2 LY6G6E PRRT1 TAPBP HSD17B8 AGPAT1 HLA-DQB2 NCR3 RNF5 KIFC1 PRRC2A C2-AS1 MIR6873 FKBPL PPT2-EGFL8 HLA-DQA1 HCG23 LOC100507547 SAPCD1 PHF1 MIR4646 HLA-DQB1-AS1 MICB MSH5-SAPCD1 LOC100294145 ZBTB22 RING1 PPP1R2P1 PSMB8-AS1 VPS52 CFB GPANK1 WDR46 HLA-DOA PSMB8 CUTA RGL2 TNXB C6orf25 LY6G6C SYNGAP1 HLA-DMB HCP5 SNORD52 LSM2 CYP21A1P NEU1 LOC102725068 CLIC1 C6orf47 PBX2 HSPA1L LTB C4B HLA-DPB1 SKIV2L MCCD1 HLA-DRB1 BAG6 STK19 HLA-DQA2 HLA-DRB6 SLC44A4 EGFL8 ATF6B HLA-DRB5 HSPA1B MIR219A1 PPT2 HSPA1A RPS18 COL11A2 MIR6721 AIF1 HCG25 CSNK2B HLA-DPA1 SNORD84 MIR3135B SLC39A7 LY6G5B HLA-DQB1 HLA-DRA LY6G5C MIR6834 NOTCH4 GPSM3 SAPCD1-AS1
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss AGPAT1 RNF5 MIR6721 FKBPL MIR6833 PPT2-EGFL8 LOC100507547 EGFL8 AGER ATF6B PRRT1 PBX2 NOTCH4 TNXB PPT2 GPSM3
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion C2 C6orf48 ZBTB9 MSH5 TAP1 BRD2 HCG26 SNORD48 SNORA38 ABHD16A B3GALT4 C6orf10 LY6G6F HCG24 TAP2 LY6G6D ATP6V1G2-DDX39B MIR6833 EHMT2 NFKBIL1 TNF ZBTB12 LOC101929163 NELFE RXRB VWA7 LTA VARS DXO TNXA LST1 BTNL2 AGER PSMB9 MIR6832 HLA-DOB DAXX ATP6V1G2 HLA-DMA DDX39B LOC100287329 MIR5004 HLA-DPB2 MIR1236 C4A DDX39B-AS1 APOM PFDN6 SNORD117 CYP21A2 DDAH2 LY6G6E PRRT1 TAPBP HSD17B8 AGPAT1 HLA-DQB2 NCR3 RNF5 KIFC1 PRRC2A C2-AS1 MIR6873 FKBPL PPT2-EGFL8 HLA-DQA1 HCG23 LOC100507547 SAPCD1 PHF1 MIR4646 HLA-DQB1-AS1 MICB MSH5-SAPCD1 LOC100294145 ZBTB22 RING1 PPP1R2P1 PSMB8-AS1 VPS52 CFB GPANK1 WDR46 HLA-DOA PSMB8 CUTA RGL2 TNXB C6orf25 LY6G6C SYNGAP1 HLA-DMB HCP5 SNORD52 LSM2 CYP21A1P NEU1 LOC102725068 CLIC1 C6orf47 PBX2 HSPA1L LTB C4B HLA-DPB1 SKIV2L MCCD1 HLA-DRB1 BAG6 STK19 HLA-DQA2 HLA-DRB6 SLC44A4 EGFL8 ATF6B HLA-DRB5 HSPA1B MIR219A1 PPT2 HSPA1A RPS18 COL11A2 MIR6721 AIF1 HCG25 CSNK2B HLA-DPA1 SNORD84 MIR3135B SLC39A7 LY6G5B HLA-DQB1 HLA-DRA LY6G5C MIR6834 NOTCH4 GPSM3 SAPCD1-AS1
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss C2 C6orf48 MSH5 HCG26 SNORD48 SNORA38 ABHD16A C6orf10 LY6G6F CFB GPANK1 LY6G6D ATP6V1G2-DDX39B MIR6833 EHMT2 NFKBIL1 TNF TNXB ZBTB12 LOC101929163 NELFE C6orf25 LY6G6C VWA7 HCP5 LTA SNORD52 VARS LSM2 DXO CYP21A1P TNXA LST1 BTNL2 NEU1 LOC102725068 AGER CLIC1 C6orf47 MIR6832 MIR6891 HLA-B PBX2 HSPA1L LTB C4B ATP6V1G2 SKIV2L MCCD1 DDX39B LOC100287329 BAG6 MIR1236 C4A STK19 DDX39B-AS1 APOM MICA SNORD117 SLC44A4 EGFL8 ATF6B CYP21A2 DDAH2 LY6G6E PRRT1 HSPA1B PPT2 HSPA1A AGPAT1 NCR3 RNF5 MIR6721 AIF1 PRRC2A C2-AS1 CSNK2B FKBPL SNORD84 PPT2-EGFL8 LY6G5B HCG23 HLA-DRA LOC100507547 LY6G5C SAPCD1 MIR4646 MICB MSH5-SAPCD1 NOTCH4 GPSM3 SAPCD1-AS1

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