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Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32174143 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03604711_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_006411.3 NP_006402.1
NM_032741.4 NP_116130.2
XM_005248805.3 XP_005248862.1
XM_005248806.2 XP_005248863.1
XM_011514234.1 XP_011512536.1
AF218034.1 AAG17276.1
AK056346.1
AK058025.1
AK299252.1
AK315950.1
BC002402.2 AAH02402.1
BC003007.1 AAH03007.1
BC004310.1 AAH04310.1
BC090849.1 AAH90849.1
DA529681.1
DB118884.1
U56417.1 AAB58775.1
Y09565.1 CAA70758.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss PRRT1 ATF6B EGFL8 MIR6721 PPT2-EGFL8 NOTCH4 GPSM3 TNXB FKBPL LOC100507547 PBX2 RNF5 PPT2 MIR6833 AGPAT1 AGER
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss C2 HLA-DRB5 NEU1 MIR6721 HLA-DQB1 NOTCH4 HLA-DRB1 TNXB FKBPL LOC100507547 HLA-DRA RNF5 MIR6833 LOC101929163 AGER C4A EHMT2 HLA-DQB1-AS1 HSPA1A BTNL2 PPT2-EGFL8 AGPAT1 DXO HSPA1B CYP21A1P CYP21A2 HCG23 C6orf10 PRRT1 ATF6B MIR1236 NELFE SNORD48 STK19 GPSM3 PBX2 TNXA C4B SNORD52 HLA-DQA1 ZBTB12 HLA-DRB6 SKIV2L EGFL8 C2-AS1 CFB PPT2 C6orf48 SLC44A4
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss PRRT1 ATF6B HLA-DRB5 MIR6721 HLA-DQB1 NOTCH4 HLA-DRB1 GPSM3 TNXB FKBPL LOC100507547 HLA-DRA PBX2 RNF5 MIR6833 LOC101929163 AGER TNXA C4A HLA-DQB1-AS1 C4B HLA-DQA1 BTNL2 HLA-DRB6 EGFL8 PPT2-EGFL8 PPT2 AGPAT1 HLA-DQA2 CYP21A1P CYP21A2 HCG23 C6orf10 MIR3135B HLA-DQB2
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss PRRT1 C2 ATF6B MIR1236 MIR6721 NELFE STK19 NOTCH4 GPSM3 TNXB FKBPL LOC100507547 PBX2 RNF5 MIR6833 AGER TNXA C4A C4B SKIV2L EGFL8 C2-AS1 PPT2-EGFL8 CFB PPT2 AGPAT1 DXO CYP21A1P CYP21A2
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion C2 HLA-DRB5 NEU1 MIR6721 BAG6 NOTCH4 HLA-DRB1 DDX39B TNXB FKBPL SNORD84 VARS LOC100507547 HLA-DRA RNF5 MIR6833 ATP6V1G2 MIR4646 LOC101929163 AGER C4A EHMT2 HSPA1A LOC100287329 ABHD16A SAPCD1-AS1 BTNL2 LY6G6E PPT2-EGFL8 NFKBIL1 LY6G6C AGPAT1 GPANK1 CLIC1 DXO HSPA1B HCP5 CYP21A1P MICB PRRC2A CYP21A2 HCG23 MIR6832 C6orf10 VWA7 TNF C6orf47 PRRT1 ATF6B DDAH2 MIR1236 MSH5-SAPCD1 NELFE SNORD48 LY6G5C STK19 HCG26 LOC102725068 CSNK2B LST1 GPSM3 APOM PBX2 TNXA C6orf25 LTA C4B SNORD52 LSM2 ZBTB12 HLA-DRB6 LY6G6D SKIV2L EGFL8 MSH5 C2-AS1 MCCD1 CFB LY6G6F HSPA1L LTB NCR3 LY6G5B PPT2 SNORA38 DDX39B-AS1 ATP6V1G2-DDX39B AIF1 C6orf48 SLC44A4 SAPCD1 SNORD117
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion C2 HLA-DMB MIR6721 HLA-DQB1 NOTCH4 DDX39B HLA-DPB2 TNXB FKBPL SNORD84 VARS HLA-DRA RNF5 SYNGAP1 LOC101929163 AGER HLA-DOB EHMT2 HLA-DQB1-AS1 HLA-DMA LOC100287329 MIR5004 ABHD16A MIR6873 LOC100294145 LY6G6E RGL2 NFKBIL1 LY6G6C HSD17B8 GPANK1 CLIC1 TAP2 CYP21A1P PRRC2A HCG23 TNF PSMB9 ATF6B DDAH2 MSH5-SAPCD1 LY6G5C ZBTB9 LOC102725068 GPSM3 APOM RPS18 BRD2 COL11A2 C6orf25 HCG24 HLA-DQA1 VPS52 ZBTB12 HLA-DRB6 MIR6834 SKIV2L MCCD1 SLC39A7 LY6G6F RXRB HSPA1L LTB B3GALT4 LY6G5B PPT2 SNORA38 KIFC1 MIR3135B HLA-DQB2 HLA-DRB5 NEU1 BAG6 HLA-DRB1 TAPBP LOC100507547 RING1 WDR46 MIR6833 ATP6V1G2 MIR4646 C4A HSPA1A SAPCD1-AS1 BTNL2 HLA-DOA PHF1 PPT2-EGFL8 AGPAT1 DXO HSPA1B HCP5 MICB CYP21A2 MIR6832 DAXX C6orf10 VWA7 C6orf47 ZBTB22 PRRT1 MIR1236 NELFE SNORD48 STK19 HCG26 PSMB8-AS1 PFDN6 CSNK2B LST1 PPP1R2P1 PBX2 CUTA MIR219A1 TNXA LTA C4B SNORD52 TAP1 LSM2 LY6G6D EGFL8 MSH5 C2-AS1 HCG25 CFB NCR3 HLA-DPB1 PSMB8 HLA-DPA1 HLA-DQA2 DDX39B-AS1 ATP6V1G2-DDX39B AIF1 C6orf48 SLC44A4 SAPCD1 SNORD117
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss PRRT1 ATF6B EGFL8 MIR6721 PPT2-EGFL8 NOTCH4 GPSM3 TNXB FKBPL LOC100507547 PBX2 RNF5 PPT2 MIR6833 AGPAT1 AGER
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion C2 HLA-DMB MIR6721 HLA-DQB1 NOTCH4 DDX39B HLA-DPB2 TNXB FKBPL SNORD84 VARS HLA-DRA RNF5 SYNGAP1 LOC101929163 AGER HLA-DOB EHMT2 HLA-DQB1-AS1 HLA-DMA LOC100287329 MIR5004 ABHD16A MIR6873 LOC100294145 LY6G6E RGL2 NFKBIL1 LY6G6C HSD17B8 GPANK1 CLIC1 TAP2 CYP21A1P PRRC2A HCG23 TNF PSMB9 ATF6B DDAH2 MSH5-SAPCD1 LY6G5C ZBTB9 LOC102725068 GPSM3 APOM RPS18 BRD2 COL11A2 C6orf25 HCG24 HLA-DQA1 VPS52 ZBTB12 HLA-DRB6 MIR6834 SKIV2L MCCD1 SLC39A7 LY6G6F RXRB HSPA1L LTB B3GALT4 LY6G5B PPT2 SNORA38 KIFC1 MIR3135B HLA-DQB2 HLA-DRB5 NEU1 BAG6 HLA-DRB1 TAPBP LOC100507547 RING1 WDR46 MIR6833 ATP6V1G2 MIR4646 C4A HSPA1A SAPCD1-AS1 BTNL2 HLA-DOA PHF1 PPT2-EGFL8 AGPAT1 DXO HSPA1B HCP5 MICB CYP21A2 MIR6832 DAXX C6orf10 VWA7 C6orf47 ZBTB22 PRRT1 MIR1236 NELFE SNORD48 STK19 HCG26 PSMB8-AS1 PFDN6 CSNK2B LST1 PPP1R2P1 PBX2 CUTA MIR219A1 TNXA LTA C4B SNORD52 TAP1 LSM2 LY6G6D EGFL8 MSH5 C2-AS1 HCG25 CFB NCR3 HLA-DPB1 PSMB8 HLA-DPA1 HLA-DQA2 DDX39B-AS1 ATP6V1G2-DDX39B AIF1 C6orf48 SLC44A4 SAPCD1 SNORD117
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss C2 NEU1 MIR6721 BAG6 NOTCH4 DDX39B TNXB FKBPL SNORD84 VARS LOC100507547 HLA-DRA RNF5 MIR6833 ATP6V1G2 MIR4646 LOC101929163 AGER C4A EHMT2 HSPA1A LOC100287329 ABHD16A SAPCD1-AS1 BTNL2 MICA LY6G6E PPT2-EGFL8 NFKBIL1 LY6G6C AGPAT1 GPANK1 CLIC1 DXO HSPA1B HCP5 CYP21A1P MICB PRRC2A CYP21A2 HCG23 MIR6832 C6orf10 VWA7 TNF C6orf47 PRRT1 ATF6B DDAH2 MIR1236 MSH5-SAPCD1 NELFE SNORD48 LY6G5C STK19 HCG26 LOC102725068 CSNK2B LST1 GPSM3 APOM PBX2 MIR6891 TNXA C6orf25 LTA C4B SNORD52 LSM2 HLA-B ZBTB12 LY6G6D SKIV2L EGFL8 MSH5 C2-AS1 MCCD1 CFB LY6G6F HSPA1L LTB NCR3 LY6G5B PPT2 SNORA38 DDX39B-AS1 ATP6V1G2-DDX39B AIF1 C6orf48 SLC44A4 SAPCD1 SNORD117

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