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Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32173031 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03614372_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_006411.3 NP_006402.1
NM_032741.4 NP_116130.2
XM_005248805.3 XP_005248862.1
XM_005248806.2 XP_005248863.1
XM_011514234.1 XP_011512536.1
AF218034.1 AAG17276.1
AK056346.1
AK058025.1
AK299252.1
AK315950.1
BC002402.2 AAH02402.1
BC003007.1 AAH03007.1
BC004310.1 AAH04310.1
BC090849.1 AAH90849.1
DA529681.1
DB118884.1
U56417.1 AAB58775.1
Y09565.1 CAA70758.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss AGPAT1 EGFL8 MIR6833 PPT2 TNXB RNF5 GPSM3 ATF6B PBX2 MIR6721 AGER PRRT1 PPT2-EGFL8 NOTCH4 LOC100507547 FKBPL
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss AGPAT1 STK19 C2 TNXA ATF6B SNORD52 NELFE C4B PRRT1 EHMT2 FKBPL CYP21A1P SLC44A4 EGFL8 CYP21A2 GPSM3 DXO C4A HLA-DQB1 HSPA1A HLA-DRB6 CFB PPT2 TNXB RNF5 HLA-DRB5 C6orf10 SNORD48 PBX2 MIR6721 SKIV2L C2-AS1 ZBTB12 NOTCH4 LOC100507547 LOC101929163 C6orf48 HCG23 MIR6833 BTNL2 HLA-DQA1 HLA-DRB1 NEU1 HLA-DQB1-AS1 HLA-DRA MIR1236 AGER PPT2-EGFL8 HSPA1B
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss AGPAT1 PPT2 TNXB RNF5 HLA-DRB5 TNXA MIR3135B ATF6B C6orf10 PBX2 MIR6721 C4B PRRT1 HLA-DQA2 NOTCH4 LOC100507547 FKBPL CYP21A1P LOC101929163 EGFL8 CYP21A2 HCG23 MIR6833 BTNL2 HLA-DQA1 GPSM3 HLA-DRB1 C4A HLA-DQB1 HLA-DQB1-AS1 HLA-DQB2 HLA-DRA AGER HLA-DRB6 PPT2-EGFL8
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss AGPAT1 STK19 C2 PPT2 TNXB RNF5 TNXA ATF6B PBX2 NELFE MIR6721 SKIV2L C2-AS1 C4B PRRT1 NOTCH4 LOC100507547 FKBPL CYP21A1P EGFL8 CYP21A2 MIR6833 GPSM3 DXO C4A MIR1236 AGER CFB PPT2-EGFL8
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion AGPAT1 STK19 ABHD16A ATP6V1G2 C2 LSM2 TNXA SNORA38 ATF6B GPANK1 ATP6V1G2-DDX39B SNORD52 DDX39B-AS1 NELFE MSH5 C4B PRRT1 CLIC1 C6orf25 LOC102725068 EHMT2 FKBPL CYP21A1P BAG6 SLC44A4 LY6G5C EGFL8 HCG26 CYP21A2 VARS LY6G5B GPSM3 DXO CSNK2B C4A MIR4646 HSPA1A SNORD117 HCP5 HLA-DRB6 MSH5-SAPCD1 CFB AIF1 C6orf47 APOM PPT2 LY6G6F TNXB RNF5 HLA-DRB5 DDX39B LTB C6orf10 SNORD48 MICB PBX2 MIR6721 SKIV2L LY6G6C C2-AS1 PRRC2A MCCD1 ZBTB12 LTA SAPCD1 NOTCH4 LY6G6E LOC100507547 LOC101929163 NFKBIL1 C6orf48 SNORD84 HSPA1L HCG23 MIR6833 BTNL2 DDAH2 HLA-DRB1 NEU1 VWA7 HLA-DRA MIR6832 LST1 MIR1236 LOC100287329 SAPCD1-AS1 NCR3 AGER LY6G6D TNF PPT2-EGFL8 HSPA1B
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion HLA-DMA STK19 ABHD16A ATP6V1G2 HLA-DPB1 TNXA SNORA38 ATP6V1G2-DDX39B CUTA BRD2 CLIC1 LOC102725068 EHMT2 HLA-DOA FKBPL SLC44A4 HCG26 CYP21A2 VARS MIR5004 HLA-DPA1 CSNK2B SYNGAP1 MIR4646 HLA-DOB HCG24 LOC100294145 HSPA1A HCP5 HLA-DRB6 MIR6873 AIF1 TAP2 LY6G6F MIR3135B ZBTB22 MIR6834 SNORD48 PBX2 TAP1 ZBTB9 RPS18 MIR219A1 C2-AS1 RGL2 HLA-DQA2 ZBTB12 NOTCH4 LY6G6E LOC100507547 HSD17B8 PPP1R2P1 LOC101929163 NFKBIL1 C6orf48 DAXX HCG23 MIR6833 PSMB8 DDAH2 HLA-DRB1 HLA-DQB1-AS1 MIR6832 B3GALT4 SAPCD1-AS1 PFDN6 LY6G6D TNF HSPA1B VPS52 AGPAT1 C2 PHF1 LSM2 COL11A2 ATF6B WDR46 GPANK1 SNORD52 HCG25 DDX39B-AS1 NELFE MSH5 C4B RING1 PRRT1 C6orf25 CYP21A1P BAG6 LY6G5C EGFL8 LY6G5B GPSM3 DXO C4A HLA-DQB1 HLA-DQB2 SNORD117 MSH5-SAPCD1 CFB HLA-DMB C6orf47 APOM SLC39A7 PPT2 TNXB RNF5 HLA-DRB5 DDX39B LTB C6orf10 HLA-DPB2 MICB RXRB MIR6721 SKIV2L LY6G6C TAPBP PRRC2A MCCD1 PSMB8-AS1 LTA PSMB9 SAPCD1 SNORD84 HSPA1L BTNL2 HLA-DQA1 KIFC1 NEU1 VWA7 HLA-DRA LST1 MIR1236 LOC100287329 NCR3 AGER PPT2-EGFL8
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss AGPAT1 EGFL8 MIR6833 PPT2 TNXB RNF5 GPSM3 ATF6B PBX2 MIR6721 AGER PRRT1 PPT2-EGFL8 NOTCH4 LOC100507547 FKBPL
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion HLA-DMA STK19 ABHD16A ATP6V1G2 HLA-DPB1 TNXA SNORA38 ATP6V1G2-DDX39B CUTA BRD2 CLIC1 LOC102725068 EHMT2 HLA-DOA FKBPL SLC44A4 HCG26 CYP21A2 VARS MIR5004 HLA-DPA1 CSNK2B SYNGAP1 MIR4646 HLA-DOB HCG24 LOC100294145 HSPA1A HCP5 HLA-DRB6 MIR6873 AIF1 TAP2 LY6G6F MIR3135B ZBTB22 MIR6834 SNORD48 PBX2 TAP1 ZBTB9 RPS18 MIR219A1 C2-AS1 RGL2 HLA-DQA2 ZBTB12 NOTCH4 LY6G6E LOC100507547 HSD17B8 PPP1R2P1 LOC101929163 NFKBIL1 C6orf48 DAXX HCG23 MIR6833 PSMB8 DDAH2 HLA-DRB1 HLA-DQB1-AS1 MIR6832 B3GALT4 SAPCD1-AS1 PFDN6 LY6G6D TNF HSPA1B VPS52 AGPAT1 C2 PHF1 LSM2 COL11A2 ATF6B WDR46 GPANK1 SNORD52 HCG25 DDX39B-AS1 NELFE MSH5 C4B RING1 PRRT1 C6orf25 CYP21A1P BAG6 LY6G5C EGFL8 LY6G5B GPSM3 DXO C4A HLA-DQB1 HLA-DQB2 SNORD117 MSH5-SAPCD1 CFB HLA-DMB C6orf47 APOM SLC39A7 PPT2 TNXB RNF5 HLA-DRB5 DDX39B LTB C6orf10 HLA-DPB2 MICB RXRB MIR6721 SKIV2L LY6G6C TAPBP PRRC2A MCCD1 PSMB8-AS1 LTA PSMB9 SAPCD1 SNORD84 HSPA1L BTNL2 HLA-DQA1 KIFC1 NEU1 VWA7 HLA-DRA LST1 MIR1236 LOC100287329 NCR3 AGER PPT2-EGFL8
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss AGPAT1 STK19 ABHD16A ATP6V1G2 C2 LSM2 TNXA SNORA38 ATF6B GPANK1 ATP6V1G2-DDX39B SNORD52 DDX39B-AS1 NELFE MSH5 C4B PRRT1 CLIC1 C6orf25 LOC102725068 EHMT2 FKBPL CYP21A1P BAG6 SLC44A4 LY6G5C MICA EGFL8 HCG26 CYP21A2 VARS LY6G5B GPSM3 DXO CSNK2B C4A MIR4646 HSPA1A SNORD117 HCP5 MSH5-SAPCD1 CFB AIF1 C6orf47 APOM PPT2 LY6G6F TNXB RNF5 DDX39B LTB C6orf10 SNORD48 MICB PBX2 MIR6721 SKIV2L LY6G6C C2-AS1 PRRC2A MCCD1 ZBTB12 HLA-B LTA SAPCD1 NOTCH4 LY6G6E LOC100507547 LOC101929163 MIR6891 NFKBIL1 C6orf48 SNORD84 HSPA1L HCG23 MIR6833 BTNL2 DDAH2 NEU1 VWA7 HLA-DRA MIR6832 LST1 MIR1236 LOC100287329 SAPCD1-AS1 NCR3 AGER LY6G6D TNF PPT2-EGFL8 HSPA1B

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