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Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32175580 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03614624_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_006411.3 NP_006402.1
NM_032741.4 NP_116130.2
XM_005248805.3 XP_005248862.1
XM_005248806.2 XP_005248863.1
XM_011514234.1 XP_011512536.1
AF218034.1 AAG17276.1
AK056346.1
AK058025.1
AK299252.1
AK315950.1
BC002402.2 AAH02402.1
BC003007.1 AAH03007.1
BC004310.1 AAH04310.1
BC090849.1 AAH90849.1
DA529681.1
DB118884.1
U56417.1 AAB58775.1
Y09565.1 CAA70758.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss AGPAT1 PPT2-EGFL8 LOC100507547 MIR6833 PPT2 MIR6721 NOTCH4 RNF5 ATF6B PBX2 GPSM3 AGER FKBPL PRRT1 EGFL8 TNXB
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss HSPA1B LOC101929163 HLA-DRB1 PPT2-EGFL8 EHMT2 CYP21A2 SLC44A4 MIR6721 HLA-DRB5 HLA-DRB6 RNF5 STK19 AGER TNXB C6orf48 SKIV2L AGPAT1 LOC100507547 NEU1 HLA-DQB1 PPT2 SNORD52 HSPA1A SNORD48 C4B HCG23 CFB C4A MIR1236 TNXA C2-AS1 PBX2 GPSM3 NELFE HLA-DQB1-AS1 FKBPL PRRT1 DXO C6orf10 ZBTB12 MIR6833 C2 BTNL2 NOTCH4 HLA-DQA1 HLA-DRA ATF6B EGFL8 CYP21A1P
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss LOC101929163 HCG23 HLA-DQA2 HLA-DRB1 C4A PPT2-EGFL8 CYP21A2 TNXA MIR6721 HLA-DRB5 HLA-DRB6 RNF5 PBX2 GPSM3 AGER HLA-DQB1-AS1 HLA-DQB2 FKBPL PRRT1 TNXB C6orf10 AGPAT1 LOC100507547 MIR3135B HLA-DQB1 MIR6833 PPT2 BTNL2 NOTCH4 HLA-DQA1 C4B HLA-DRA ATF6B EGFL8 CYP21A1P
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss CFB C4A PPT2-EGFL8 MIR1236 CYP21A2 TNXA C2-AS1 MIR6721 RNF5 PBX2 STK19 GPSM3 AGER NELFE FKBPL PRRT1 DXO TNXB SKIV2L AGPAT1 LOC100507547 MIR6833 C2 PPT2 NOTCH4 C4B ATF6B EGFL8 CYP21A1P
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion HSPA1B LOC101929163 BAG6 VARS HLA-DRB1 PPT2-EGFL8 LY6G6E EHMT2 LOC102725068 CYP21A2 DDAH2 SLC44A4 SAPCD1 ATP6V1G2-DDX39B MIR6721 NFKBIL1 HLA-DRB5 HLA-DRB6 RNF5 DDX39B SNORA38 STK19 AGER MIR4646 TNXB GPANK1 MCCD1 C6orf48 ATP6V1G2 SKIV2L AGPAT1 AIF1 LOC100507547 NEU1 C6orf47 PPT2 MICB SNORD52 LST1 HSPA1A PRRC2A SNORD48 C4B MIR6832 LY6G6D APOM SNORD84 LY6G5B HCG23 DDX39B-AS1 LY6G5C CFB C4A MIR1236 HSPA1L TNXA C2-AS1 TNF CSNK2B SNORD117 PBX2 GPSM3 NELFE LTB HCG26 SAPCD1-AS1 FKBPL PRRT1 DXO LY6G6C CLIC1 C6orf10 LY6G6F ZBTB12 ABHD16A MSH5 LOC100287329 C6orf25 MSH5-SAPCD1 NCR3 MIR6833 C2 BTNL2 HCP5 VWA7 NOTCH4 LSM2 HLA-DRA ATF6B LTA EGFL8 CYP21A1P
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion HLA-DQA2 VARS PPT2-EGFL8 EHMT2 LOC102725068 CYP21A2 DDAH2 SLC44A4 SAPCD1 VPS52 NFKBIL1 STK19 AGER TNXB GPANK1 C6orf48 ATP6V1G2 B3GALT4 AGPAT1 CUTA MIR6834 AIF1 SYNGAP1 MIR6873 MICB SNORD52 LST1 HSPA1A MIR6832 LY6G6D RGL2 HCG23 DDX39B-AS1 TAP2 MIR1236 COL11A2 HSPA1L C2-AS1 TAPBP TNF CSNK2B PBX2 BRD2 RXRB NELFE HLA-DQB1-AS1 LTB SAPCD1-AS1 FKBPL PRRT1 DXO PSMB8-AS1 PHF1 ZBTB9 HSD17B8 LY6G6F PFDN6 RING1 PSMB8 ABHD16A HLA-DOB MSH5-SAPCD1 NCR3 BTNL2 NOTCH4 HLA-DQA1 HLA-DRA ATF6B HLA-DPB1 DAXX HLA-DOA HLA-DMB CYP21A1P HSPA1B LOC101929163 HLA-DPA1 PSMB9 BAG6 HLA-DRB1 KIFC1 LY6G6E ATP6V1G2-DDX39B MIR6721 HLA-DRB5 HLA-DRB6 RNF5 DDX39B SNORA38 TAP1 MIR4646 HLA-DQB2 MCCD1 HCG25 SKIV2L LOC100507547 NEU1 WDR46 HLA-DQB1 C6orf47 PPT2 PRRC2A SNORD48 C4B HLA-DMA ZBTB22 APOM SNORD84 LY6G5B RPS18 LY6G5C CFB C4A TNXA SNORD117 GPSM3 HCG26 SLC39A7 LY6G6C CLIC1 C6orf10 ZBTB12 LOC100294145 MSH5 LOC100287329 MIR3135B C6orf25 HLA-DPB2 HCG24 MIR6833 C2 HCP5 VWA7 LSM2 MIR219A1 PPP1R2P1 MIR5004 LTA EGFL8
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss AGPAT1 PPT2-EGFL8 LOC100507547 MIR6833 PPT2 MIR6721 NOTCH4 RNF5 ATF6B PBX2 GPSM3 AGER FKBPL PRRT1 EGFL8 TNXB
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion HLA-DQA2 VARS PPT2-EGFL8 EHMT2 LOC102725068 CYP21A2 DDAH2 SLC44A4 SAPCD1 VPS52 NFKBIL1 STK19 AGER TNXB GPANK1 C6orf48 ATP6V1G2 B3GALT4 AGPAT1 CUTA MIR6834 AIF1 SYNGAP1 MIR6873 MICB SNORD52 LST1 HSPA1A MIR6832 LY6G6D RGL2 HCG23 DDX39B-AS1 TAP2 MIR1236 COL11A2 HSPA1L C2-AS1 TAPBP TNF CSNK2B PBX2 BRD2 RXRB NELFE HLA-DQB1-AS1 LTB SAPCD1-AS1 FKBPL PRRT1 DXO PSMB8-AS1 PHF1 ZBTB9 HSD17B8 LY6G6F PFDN6 RING1 PSMB8 ABHD16A HLA-DOB MSH5-SAPCD1 NCR3 BTNL2 NOTCH4 HLA-DQA1 HLA-DRA ATF6B HLA-DPB1 DAXX HLA-DOA HLA-DMB CYP21A1P HSPA1B LOC101929163 HLA-DPA1 PSMB9 BAG6 HLA-DRB1 KIFC1 LY6G6E ATP6V1G2-DDX39B MIR6721 HLA-DRB5 HLA-DRB6 RNF5 DDX39B SNORA38 TAP1 MIR4646 HLA-DQB2 MCCD1 HCG25 SKIV2L LOC100507547 NEU1 WDR46 HLA-DQB1 C6orf47 PPT2 PRRC2A SNORD48 C4B HLA-DMA ZBTB22 APOM SNORD84 LY6G5B RPS18 LY6G5C CFB C4A TNXA SNORD117 GPSM3 HCG26 SLC39A7 LY6G6C CLIC1 C6orf10 ZBTB12 LOC100294145 MSH5 LOC100287329 MIR3135B C6orf25 HLA-DPB2 HCG24 MIR6833 C2 HCP5 VWA7 LSM2 MIR219A1 PPP1R2P1 MIR5004 LTA EGFL8
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss HSPA1B LOC101929163 BAG6 VARS PPT2-EGFL8 LY6G6E EHMT2 LOC102725068 CYP21A2 DDAH2 SLC44A4 SAPCD1 ATP6V1G2-DDX39B MIR6721 NFKBIL1 RNF5 DDX39B SNORA38 STK19 AGER MIR4646 TNXB GPANK1 MCCD1 C6orf48 ATP6V1G2 SKIV2L AGPAT1 AIF1 LOC100507547 NEU1 MICA C6orf47 PPT2 MICB SNORD52 LST1 HSPA1A PRRC2A SNORD48 C4B MIR6832 LY6G6D APOM SNORD84 LY6G5B HCG23 DDX39B-AS1 LY6G5C CFB C4A MIR1236 HSPA1L TNXA C2-AS1 HLA-B MIR6891 TNF CSNK2B SNORD117 PBX2 GPSM3 NELFE LTB HCG26 SAPCD1-AS1 FKBPL PRRT1 DXO LY6G6C CLIC1 C6orf10 LY6G6F ZBTB12 ABHD16A MSH5 LOC100287329 C6orf25 MSH5-SAPCD1 NCR3 MIR6833 C2 BTNL2 HCP5 VWA7 NOTCH4 LSM2 HLA-DRA ATF6B LTA EGFL8 CYP21A1P

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