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Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32174792 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03615622_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_006411.3 NP_006402.1
NM_032741.4 NP_116130.2
XM_005248805.3 XP_005248862.1
XM_005248806.2 XP_005248863.1
XM_011514234.1 XP_011512536.1
AF218034.1 AAG17276.1
AK056346.1
AK058025.1
AK299252.1
AK315950.1
BC002402.2 AAH02402.1
BC003007.1 AAH03007.1
BC004310.1 AAH04310.1
BC090849.1 AAH90849.1
DA529681.1
DB118884.1
U56417.1 AAB58775.1
Y09565.1 CAA70758.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss LOC100507547 AGPAT1 FKBPL MIR6833 EGFL8 PPT2-EGFL8 ATF6B PBX2 NOTCH4 TNXB AGER MIR6721 PRRT1 RNF5 PPT2 GPSM3
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss LOC100507547 C6orf48 MIR6833 EGFL8 CFB HLA-DRA TNXB LOC101929163 NEU1 HLA-DRB6 RNF5 PPT2 AGPAT1 HLA-DRB1 ATF6B HCG23 SNORD48 AGER ZBTB12 MIR6721 PRRT1 DXO GPSM3 HLA-DQB1 BTNL2 MIR1236 PBX2 CYP21A1P NOTCH4 SNORD52 C2 HLA-DRB5 SKIV2L C2-AS1 TNXA C6orf10 STK19 SLC44A4 C4B HSPA1B FKBPL PPT2-EGFL8 C4A CYP21A2 EHMT2 NELFE HLA-DQA1 HLA-DQB1-AS1 HSPA1A
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss LOC100507547 MIR6833 EGFL8 PBX2 CYP21A1P NOTCH4 MIR3135B HLA-DRA TNXB LOC101929163 HLA-DRB5 HLA-DRB6 RNF5 TNXA C6orf10 PPT2 C4B AGPAT1 FKBPL HLA-DRB1 PPT2-EGFL8 C4A ATF6B CYP21A2 HLA-DQB2 HCG23 AGER MIR6721 PRRT1 HLA-DQA1 HLA-DQB1-AS1 GPSM3 HLA-DQB1 BTNL2 HLA-DQA2
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss MIR1236 LOC100507547 MIR6833 EGFL8 CFB PBX2 CYP21A1P NOTCH4 C2 TNXB SKIV2L C2-AS1 RNF5 TNXA STK19 PPT2 C4B AGPAT1 FKBPL PPT2-EGFL8 C4A ATF6B CYP21A2 AGER MIR6721 PRRT1 DXO NELFE GPSM3
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion DDAH2 LOC100507547 MSH5-SAPCD1 C6orf48 MIR6833 EGFL8 CFB LSM2 TNF ABHD16A VARS HLA-DRA TNXB LOC101929163 NEU1 MSH5 HLA-DRB6 RNF5 BAG6 PPT2 CLIC1 SNORD84 ATP6V1G2-DDX39B LOC102725068 AGPAT1 HLA-DRB1 C6orf25 DDX39B-AS1 ATF6B MCCD1 HCG23 LY6G5B NFKBIL1 SNORD48 AGER MIR4646 ZBTB12 HCG26 MIR6721 LY6G6C PRRT1 SNORA38 DXO APOM ATP6V1G2 GPSM3 BTNL2 DDX39B HSPA1L MIR1236 SAPCD1 PBX2 CYP21A1P NOTCH4 SNORD52 SNORD117 C2 HLA-DRB5 SKIV2L C2-AS1 LOC100287329 TNXA C6orf10 STK19 SLC44A4 GPANK1 C6orf47 LY6G6D LY6G6E C4B NCR3 HSPA1B LY6G5C FKBPL PPT2-EGFL8 C4A CYP21A2 AIF1 LTB MICB PRRC2A EHMT2 LY6G6F LTA LST1 HCP5 MIR6832 VWA7 CSNK2B NELFE SAPCD1-AS1 HSPA1A
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion LOC100507547 C6orf48 MIR6833 RPS18 ABHD16A HLA-DRA LOC101929163 NEU1 LOC100294145 HLA-DRB6 BAG6 HLA-DMB SNORD84 RING1 AGPAT1 C6orf25 B3GALT4 DDX39B-AS1 ATF6B MCCD1 HCG24 SNORD48 MIR4646 HCG26 LY6G6C PRRT1 ZBTB9 DXO WDR46 APOM GPSM3 BTNL2 DDX39B HSPA1L MIR219A1 PBX2 RXRB SNORD52 TAP1 C2-AS1 LOC100287329 PPP1R2P1 GPANK1 C6orf47 LY6G6D LY6G6E C4B FKBPL PPT2-EGFL8 CYP21A2 HLA-DQB2 AIF1 PRRC2A LY6G6F SYNGAP1 HCP5 MIR6832 VWA7 CSNK2B HLA-DPA1 RGL2 HLA-DQA1 MIR5004 HLA-DQB1-AS1 MIR6834 HSPA1A BRD2 DDAH2 ZBTB22 MSH5-SAPCD1 KIFC1 EGFL8 CFB LSM2 HLA-DOB TNF PSMB9 PFDN6 VARS TNXB MSH5 RNF5 DAXX PPT2 CLIC1 COL11A2 ATP6V1G2-DDX39B LOC102725068 HLA-DRB1 HCG23 LY6G5B PSMB8 NFKBIL1 AGER ZBTB12 MIR6721 TAPBP SNORA38 HLA-DPB1 ATP6V1G2 HLA-DQB1 HLA-DMA MIR1236 PHF1 SAPCD1 CYP21A1P NOTCH4 PSMB8-AS1 CUTA SNORD117 C2 MIR3135B MIR6873 HLA-DRB5 HLA-DOA SKIV2L TNXA C6orf10 STK19 SLC39A7 SLC44A4 NCR3 HSPA1B TAP2 LY6G5C C4A LTB MICB EHMT2 HLA-DPB2 LTA LST1 HCG25 VPS52 NELFE SAPCD1-AS1 HSD17B8 HLA-DQA2
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss LOC100507547 AGPAT1 FKBPL MIR6833 EGFL8 PPT2-EGFL8 ATF6B PBX2 NOTCH4 TNXB AGER MIR6721 PRRT1 RNF5 PPT2 GPSM3
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion LOC100507547 C6orf48 MIR6833 RPS18 ABHD16A HLA-DRA LOC101929163 NEU1 LOC100294145 HLA-DRB6 BAG6 HLA-DMB SNORD84 RING1 AGPAT1 C6orf25 B3GALT4 DDX39B-AS1 ATF6B MCCD1 HCG24 SNORD48 MIR4646 HCG26 LY6G6C PRRT1 ZBTB9 DXO WDR46 APOM GPSM3 BTNL2 DDX39B HSPA1L MIR219A1 PBX2 RXRB SNORD52 TAP1 C2-AS1 LOC100287329 PPP1R2P1 GPANK1 C6orf47 LY6G6D LY6G6E C4B FKBPL PPT2-EGFL8 CYP21A2 HLA-DQB2 AIF1 PRRC2A LY6G6F SYNGAP1 HCP5 MIR6832 VWA7 CSNK2B HLA-DPA1 RGL2 HLA-DQA1 MIR5004 HLA-DQB1-AS1 MIR6834 HSPA1A BRD2 DDAH2 ZBTB22 MSH5-SAPCD1 KIFC1 EGFL8 CFB LSM2 HLA-DOB TNF PSMB9 PFDN6 VARS TNXB MSH5 RNF5 DAXX PPT2 CLIC1 COL11A2 ATP6V1G2-DDX39B LOC102725068 HLA-DRB1 HCG23 LY6G5B PSMB8 NFKBIL1 AGER ZBTB12 MIR6721 TAPBP SNORA38 HLA-DPB1 ATP6V1G2 HLA-DQB1 HLA-DMA MIR1236 PHF1 SAPCD1 CYP21A1P NOTCH4 PSMB8-AS1 CUTA SNORD117 C2 MIR3135B MIR6873 HLA-DRB5 HLA-DOA SKIV2L TNXA C6orf10 STK19 SLC39A7 SLC44A4 NCR3 HSPA1B TAP2 LY6G5C C4A LTB MICB EHMT2 HLA-DPB2 LTA LST1 HCG25 VPS52 NELFE SAPCD1-AS1 HSD17B8 HLA-DQA2
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss DDAH2 LOC100507547 MSH5-SAPCD1 C6orf48 MIR6833 EGFL8 CFB LSM2 TNF ABHD16A VARS HLA-DRA TNXB LOC101929163 NEU1 MSH5 RNF5 BAG6 PPT2 MICA CLIC1 SNORD84 ATP6V1G2-DDX39B LOC102725068 AGPAT1 C6orf25 DDX39B-AS1 ATF6B MCCD1 HCG23 LY6G5B NFKBIL1 SNORD48 AGER MIR4646 ZBTB12 HCG26 MIR6721 LY6G6C PRRT1 SNORA38 DXO APOM ATP6V1G2 GPSM3 BTNL2 DDX39B HSPA1L MIR1236 SAPCD1 PBX2 CYP21A1P NOTCH4 SNORD52 SNORD117 C2 MIR6891 SKIV2L C2-AS1 LOC100287329 TNXA C6orf10 STK19 SLC44A4 GPANK1 C6orf47 LY6G6D LY6G6E C4B NCR3 HSPA1B LY6G5C FKBPL PPT2-EGFL8 C4A CYP21A2 AIF1 LTB MICB PRRC2A EHMT2 LY6G6F LTA LST1 HCP5 MIR6832 VWA7 CSNK2B NELFE SAPCD1-AS1 HLA-B HSPA1A

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