Hs03642059_cn

• Gene Symbol: TCAF1
• Assay Reference Genome Location: Chr.7:143883890 on build GRCh38
• Cytoband: 7q35

Target Gene Details

• Entrez Gene ID: 9747
• Gene Name: TRPM8 channel associated factor 1
• Gene Aliases: FAM115A
• Location: Chr.7:143851368-143902228 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TCAF1	NM_001206938.1			NP_001193867.1
	NM_001206941.1			NP_001193870.1
	NM_014719.2			NP_055534.1
	XM_005250074.3			XP_005250131.1
	XM_005250075.2			XP_005250132.1
	XM_006716191.2			XP_006716254.1
	XM_006716192.3			XP_006716255.1
	XM_017012834.1			XP_016868323.1
	XM_017012836.1			XP_016868325.1
	AB018281.1
	AK001640.1
	AK291605.1
	AK299911.1
	BC000609.2			AAH00609.1
	DA196926.1
	DA317873.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471645	Chr.7:143741167 - 143958691 on Build GRCh38	Gain+Loss	OR2F2 TCAF1 CTAGE6 OR2F1 LOC154761 TCAF2P1
nsv428188	Chr.7:143450682 - 144500577 on Build GRCh38	Gain+Loss	TCAF2 LOC101928605 ARHGEF5 OR2A7 OR2F2 ARHGEF34P TCAF1 ARHGEF35 CTAGE8 LOC154761 EPHA1-AS1 OR2A20P LOC101928422 OR2A12 OR2A1-AS1 OR2A5 CTAGE4 OR2A2 OR6B1 CTAGE6 OR2F1 TPK1 TAS2R41 OR2A42 NOBOX OR2A25 CTAGE15 OR2A9P OR2A1 OR2A14 TCAF2P1
nsv469570	Chr.7:143741166 - 143958691 on Build GRCh38	Gain+Loss	OR2F2 TCAF1 CTAGE6 OR2F1 LOC154761 TCAF2P1
dgv6725n100	Chr.7:143870954 - 144214519 on Build GRCh38	Gain	OR2A25 LOC101928605 OR6B1 OR2F2 TCAF1 OR2A12 ARHGEF35 OR2A14 OR2F1 OR2A5 CTAGE4 OR2A2
esv3891223	Chr.7:143878890 - 144177097 on Build GRCh38	Loss	OR2A25 OR6B1 OR2F2 TCAF1 OR2A12 OR2A14 OR2F1 OR2A5 OR2A2
nsv608682	Chr.7:143444382 - 144177097 on Build GRCh38	Gain	TCAF2 OR6B1 OR2F2 TCAF1 CTAGE6 OR2F1 TAS2R41 LOC154761 EPHA1-AS1 OR2A25 CTAGE15 TAS2R60 LOC101928422 OR2A12 OR2A14 OR2A5 OR2A2 TCAF2P1
dgv11664n54	Chr.7:143848626 - 144177097 on Build GRCh38	Gain	OR2A25 OR6B1 OR2F2 TCAF1 OR2A12 OR2A14 OR2F1 OR2A5 OR2A2
esv2422489	Chr.7:143510941 - 144038942 on Build GRCh38	Duplication	TCAF2 CTAGE15 OR6B1 OR2F2 LOC101928422 TCAF1 CTAGE6 OR2F1 LOC154761 TCAF2P1 EPHA1-AS1
nsv522225	Chr.7:143728285 - 144177097 on Build GRCh38	Gain	TCAF2 OR6B1 OR2F2 TCAF1 CTAGE6 OR2F1 LOC154761 OR2A25 OR2A12 OR2A14 OR2A5 OR2A2 TCAF2P1
dgv6724n100	Chr.7:143846746 - 143913658 on Build GRCh38	Loss	TCAF1 OR2F1
esv2752147	Chr.7:143875193 - 144169439 on Build GRCh38	Gain	OR2A25 OR6B1 OR2F2 TCAF1 OR2A12 OR2A14 OR2F1 OR2A5 OR2A2
dgv6712n100	Chr.7:143733483 - 143897882 on Build GRCh38	Loss	TCAF1 CTAGE6 LOC154761 TCAF2P1
nsv8227	Chr.7:143519748 - 144378447 on Build GRCh38	Gain+Loss	TCAF2 LOC101928605 ARHGEF5 OR2A7 OR2F2 ARHGEF34P TCAF1 ARHGEF35 CTAGE8 LOC154761 EPHA1-AS1 OR2A20P LOC101928422 OR2A12 OR2A1-AS1 OR2A5 CTAGE4 OR2A2 OR6B1 CTAGE6 OR2F1 OR2A42 OR2A25 CTAGE15 OR2A9P OR2A1 OR2A14 TCAF2P1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

transport
negative regulation of cell migration
positive regulation of protein targeting to membrane
positive regulation of anion channel activity

Function(s)

protein binding
ion channel binding