Hs03701435_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136684476 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC019292.1			AAH19292.1
	BF347518.1
	CN407343.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	HSPC324 EGFL7 MIR126 LINC01451 AGPAT2
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	FAM69B HSPC324 EGFL7 MIR126 MIR4674 LINC01451 MIR4673 NALT1 NOTCH1 AGPAT2 SNHG7
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	LCN8 HSPC324 LCN10 SNORA17B AGPAT2 LCN15 FAM69B EGFL7 MIR126 LCN6 LINC01451 MIR6722 SNORA17A SNHG7 LOC100128593
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	CCDC183-AS1 TRAF2 LCN8 HSPC324 PMPCA MIR4674 MIR4673 CCDC183 NALT1 NOTCH1 PHPT1 RABL6 LCN10 SNORA17B FAM69B GPSM1 TMEM141 EGFL7 MIR126 LINC01451 EDF1 C9orf172 LOC100128593 INPP5E SDCCAG3 AGPAT2 LCN15 CARD9 SNAPC4 LCN6 DNLZ MIR4479 MIR4292 C9orf163 MIR6722 SEC16A SNORA17A SNHG7 MAMDC4
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	TRAF2 LCN8 HSPC324 MAN1B1 GRIN1 NOTCH1 PHPT1 RABL6 LCN10 LOC101930307 SAPCD2 FAM69B MAN1B1-AS1 TMEM141 MIR126 C9orf172 INPP5E SDCCAG3 PRR31 LRRC26 CARD9 LCN6 FUT7 MIR4479 C9orf163 ENTPD2 SNHG7 C9orf139 CCDC183-AS1 C8G PMPCA MIR4674 MIR4673 CCDC183 NALT1 LCN12 SNORA17B PTGDS NPDC1 EGFL7 TMEM210 LINC01451 EDF1 C9orf142 LOC100128593 DPP7 AGPAT2 LCN15 CLIC3 MIR3621 FBXW5 SNAPC4 DNLZ LCNL1 MIR4292 ABCA2 MIR6722 SEC16A UAP1L1 SNORA17A MAMDC4
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	LCN8 HSPC324 MIR4674 MIR4673 NALT1 NOTCH1 LCN10 SNORA17B AGPAT2 LCN15 FAM69B EGFL7 MIR126 LCN6 LINC01451 MIR6722 SNORA17A SNHG7 LOC100128593
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	FAM69B HSPC324 EGFL7 MIR126 LINC01451 AGPAT2
dgv13006n54	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	FAM69B HSPC324 EGFL7 MIR126 AGPAT2 SNHG7
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	TRAF2 LCN8 HSPC324 TOR4A MAN1B1 GRIN1 PHPT1 RABL6 LCN10 LOC101930307 SAPCD2 FAM69B MAN1B1-AS1 TMEM141 MIR126 C9orf172 PRR31 LRRC26 STPG3 NRARP LCN6 FUT7 MIR4479 ENTPD2 SNHG7 C9orf139 CCDC183-AS1 C8G NDOR1 CCDC183 LCN12 SNORA17B PTGDS NPDC1 EGFL7 TUBB4B TMEM203 TMEM210 FAM166A LINC01451 ANAPC2 EDF1 C9orf142 LOC100128593 TPRN DPP7 SLC34A3 NELFB CYSRT1 AGPAT2 LCN15 CLIC3 MIR3621 FBXW5 RNF224 SSNA1 RNF208 LCNL1 MIR4292 ABCA2 MIR6722 UAP1L1 SNORA17A EXD3 MAMDC4 C9orf173-AS1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity